# HG changeset patch # User earlhaminst # Date 1478865446 18000 # Node ID 304d1a82708f482d8ed6c61d1c932888549ec4f1 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/t_coffee_to_cigar commit e24b91d3051c422ee2a20caf8bb12f0896e2c84a-dirty diff -r 000000000000 -r 304d1a82708f t_coffee_to_cigar.pl --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/t_coffee_to_cigar.pl Fri Nov 11 06:57:26 2016 -0500 @@ -0,0 +1,48 @@ +#!/usr/bin/perl +# +use strict; +use warnings; + +# A simple Perl script to convert FASTA sequence alignments into 2-column output where first column is FASTA id and second is CIGAR line +# TCoffee_to_cigar.pl + +sub convert_and_print { + my ($header, $sequence) = @_; + # Converts each match into M and each gap into D + $sequence =~ s/[^-]/M/g; + $sequence =~ s/-/D/g; + + # Split the sequence in substrings composed by the same letter + $sequence =~ s/DM/D,M/g; + $sequence =~ s/MD/M,D/g; + my @cigar_array = split(',', $sequence); + + # Condense each substring, e.g. DDDD in 4D, and concatenate them again + my $cigar = ''; + foreach my $str (@cigar_array) { + if (length($str) > 1) { + $cigar .= length($str); + } + $cigar .= substr($str, 0, 1); + } + print "$header\t$cigar\n"; +} + +my $file1 = $ARGV[0]; +open my $fh1, '<', $file1; + +my $header = '', my $sequence = ''; +while (my $line = <$fh1>) { + chomp $line; + if (substr($line, 0, 1) eq '>') { + if ($header) { + convert_and_print($header, $sequence); + } + $header = substr($line, 1); + $sequence = ''; + } else { + $sequence .= $line; + } +} +close $fh1; +convert_and_print($header, $sequence); diff -r 000000000000 -r 304d1a82708f t_coffee_to_cigar.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/t_coffee_to_cigar.xml Fri Nov 11 06:57:26 2016 -0500 @@ -0,0 +1,35 @@ + + + Converts T-Coffee FASTA alignments to CIGAR strings + + + $output +]]> + + + + + + + + + + + + + + + + + + + + + + + diff -r 000000000000 -r 304d1a82708f test-data/input.fasta --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/input.fasta Fri Nov 11 06:57:26 2016 -0500 @@ -0,0 +1,1560 @@ +>90 +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +----------------------------------------------MGVG +YLTVQ-ECNSDERKI---FS----KHFTRV----MFRVNALLVVNAILMG +VMVVLG-------AYGR-YRRHPLTRYIFLGATALFIPI--ISYVLSD-- +-----IG-NQN-GL--IL------FA--DG----EKIVGRMCNAS-THMN +LVLIWTGLVQMVGISTTLVVVS--DP-REG---RNI--GPSVALLVQAMW +TSYLMVYNTRLDYYTSIDLGGTTTDTY---------I-KWSLVN--VFS- +-PTGLVIVPPFALTF----AK--LLFKCFVWHKARK-------------- +SLAIGCNPRLIVGYMEQLHDADMT----N-----D----YG-DI--PPPL +--IVM---GEDTIS--VDK-E-PHGYSFALIP----------NRGGLVTL +DKVW-QLDDMHD--LKLTSHL----KDVCLSFALSK-LLRCRFARYTN-- +-AKTGFTKASSFLRNMLLE-D--SNDERV-----LQLIEYELSFLHDVYF +SSLVITY------SESRMPILS-IL-ISLSGIGYCLLFTMARVYLP---- +-FI--LADR---STA-----S-SELI-SCL-YRCLQFEGEQ---QGTTT- +------H--LRGQDFGSPAFDLVPIVVLVALVVLAEI----REIAFY--- +-VCSNWTKVALICAHINH-PSWQQSPIMQKCIRHVLQCRCK-ILNHWEDT +MNQC-SILVLHPRN--TPM------GL--LRRLK--P---G----Q--KV +-K--VPRA-----------VKAGI-----MN-ALRSY-ERSRNNNR-MP- +SLCPRPQLKTGDNLLWVVDGTKGIAKTILVCHIATSILELRSA------- +---GSC----QP--LS---DHKTAAIH-------LSRYCA-----YLVAY +SPELLPEDDEWCKSLYKTVKKKAKHILA-GM-------PTPKVDYQP--L +VELMSA--SQN----------H-E-VLKD-GAKLGQQLAELN--Q-G-EA +NTAWELLAGFWSEMMLYIA-PS-DNI--DG-HS---EAIARGGE--L--I +--TL------------VWALLAHL---------G-I-------------- +-------------F--SRAAGDPASI-----TG-----ES---------- +-------------------------------------------------- +-------------------------V--- +>52 +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------MSLSCDAS-GHVF +LILWWVCLAQIIGTNTSTMVAA--DD-REG---RNN--SIPVILLAQAMW +TLNLVFGFHFLF-------------------------------------- +-FYKLLLWIFTILLL----AK--LGLKCFAFWMARH-------------- +SLAHGRNPRIIVGYMMQLHKRSQHA-G-PTIEQNLETSDKQ-L--LPPPL +--IVM---GEERQT--VEK-N-PQD------------------------- +-------------------------------------------------- +--------------------------------------TTQLFFSHTFG- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +------------------------------------------FFSVW--- +-------------------------------------------------- +-------------------------------------------------- +----AIKVRTS--------------------------------------- +-------------------------------------------------- +-------------------------------------------RYEV--L +VKLLSI--PEA-----------HE-VLQK-GASLATQLVME-----D-G- +STAWGVLAEFWSEMILHAAS-S-SKL--EN-HA---EAMAGGAE--L--I +--TL------------LWALVMHA---------G-P-------------- +-------------A--PAPKPSTVV-------A-----PSAEV------- +----------EVLVT----------------------------------- +-------------------------H--- +>48 +MTADDWQSTS---------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +---------TRG-------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +--------------------SKQPLTA-------DAGYCA-----YLMAY +SPELLPDDDAWSNDMYKAAKKDAERVLS-GYV----TKPTPELQYRH--L +VELLGA--RSK----------H-E-VLKD-GAKLGEQLAESM--L-G-E- +EVGWEALAEFWCKMPMYIAP-S-DNL--DG-HA---EAIARGGE--L--V +--TL------------LWALLTHL---------G-V-------------- +-------------V--SRPEATSTTNTTTTTTG-----ASDV-------- +-------------------------------------------------- +-------------------------V--- +>70 +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +----------------------------------------MAVLMLRL-- +-----------------------------------------------CL- +---FLL-------LSVHVVHHATAVSFDHD-----SFSS--GDFRAE-DD +A--K-II-DGR-ID--LL----------GDKTFA----GCRARGRVL--- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +----------------------------------------R-HI--GVDV +NNIDS-R-GNFMIL--PDTSL-VDAGVMSSTV---------SYDSATTRL +DVFLS-VGG--------------TNYTLGATIDLRNLLPDKVSIGFSA-- +-ATGAAYGSNHTVLSCSFQS---TLPTRNDT--A--G-----------SI +WSTKLSA------GVAAAALLV-LL-LGV-AVAVLLRRASRRNRQP---- +-D--DKDM------LAGDMT-PDSLD-IDD-DEFGSSAGPR---PIPYA- +------NLAAATRNFAEEGKLGQGGSGSVYRGHMKELG--GRDVAIK--- +-VFSRGASSEGRKEYR--------------------------RLLLVYEL +VHNG-SLDGYLYGK--QEV--LTWQVR--YQIILGLA---SAVLYL--HQ +-E--WDQC-----------VVHGDIKPSNIM-LDESF-NT----KL-GDF +GLSRLIDHGMSLQTMTGMAGTPGYLDPECVITGKASTESDMYSF------ +----GV----TLLEIV---CGRRPMAP-P------SAGAK-----DG--- +---QVFRLLEWAWDLYGRG-----TALDA-ADERLGSVFDQWEVERV--V +AVGLWA--AHP-------------------DPKMRPAIRQAA-EALQS-- +RKFRMPVLPPKMPVAVYLQP-FAAST--MEY-S---DTTTTVGS--S--- +--------------------TS--RTTATRSSNS-S-------------- +-------------MP-A-AVS---E------------------------- +--------------E-----------------LV---------------- +----------------------------- +>60 +-------------------------------------------------- +----------------------------------MR-------------- +--SLCN-------------------------------------------- +------------------LSIL---------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +--------------------TTKLLASQDSRLI-QQHHPREQ-EQ-EQ-- +---EV-HVFVRSLRS---IV----RHRGGRGIG-VSRVNALLVANAILMA +VIAVIG-------AYRHRYQHHPLIRFIYLGATTLFLPI--VSYVVSS-- +-----IQ-NPY-NI--SL------YA--VK----DIVITANCEAL-LHVP +LVMLWISFVQMY-------------------------------------- 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+-------------------------------------------------- +-------------------------I--- +>62 +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +------------MAF---FI----KHVRWV----VLRLNALLVTNAILMA +VIAGLG-------TYGHHYRHHPLIRFLYLGAITLFLPI--VSDVVST-- +-----IP-NPY-TI--TV------YP--KH----DRVILSNCEAD-GHVF +LVILWIGLVQIVGANATTIVAS--DS-REG---RSI--APSAVQLVKAIW 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+-------------------------------------------------- +-------------------------V--- +>64 +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +---------------------------------------MGG-NS-RN-- +---ST-DCSTVEMAF---FT----KQKGGL----VSRINTLLVVNTILMA +VIAVMG-------AYRHRYRHHPLIRFIYLAATTLFLPI--VSYVVSA-- +-----IE-NPY-NV--TN------YV--LK----YTVITAKCEAR-LHVF +SVMLWIGLVQIVGTNAIATVAG--DY-REG---RSI--APPAVQLVQAIW 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+-------------------------------------------------- +-------------------------V--- +>72 +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +----------------------------------------MRYYSA---- +-------------------------------------------------- +-C-L-L-------PLSLLFYHADSLSFRYD--FINTTNK--VDFGALGDD +C--N-IS-DHR-AD--LT----------SIS--AN--NYTNNLGRLVYPK +PMQLWDAATGETASFTTTFSFGM-DA-VPG---EPV-------------- 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+--------------------------------ED---------------- +-----------------------DDDDKA +>84 +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +----------------------------------------MAELKLCL-- +-------------------------------------------------- +---CFL-------LLCVHVHHATAISFSYN-----SFRS--GDFREE-DD +A--M-VT-DGR-IE--LV----------GDE--A----GGRARGRVLYKQ +AVQLWDGVKGETASFTTSFNFSI-QS-LPG---RSS-------------- 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+-------------------------------------------------- +-------------------------S--- +>24 +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------MGSTV-HGP-S-- +---AH-SKSEEFWLN---HI----TRGENNERSPTARPPNLSPDATASKS +SLESPD-------PNPNPSLQARAPMDNFFNSVFAAAAA--GEEEEE--- +--EREGE-EEQ-AASAAE------RDGGGDF--G----GGWSFGGLIKTF +ADEMEAQRGDHEEGEQEAAAAA-VEA-EEEG--G-G-------------- +------------------------------------------SG--GGW- +-SFGGLIKTL----AEELPQREEEEAVEEEEEEER--------------- +---------------------------------------EQ-ET--EAAA +AEEDLGE-----GD--FSGGG-WSFGGLMKT------------------- +----------------------------------FASRSESVLEGYRRDL +QDLGTGLRLETTVLRQAAVR---AAAALPGALEA-GAS---------VAS +DRLESVGQAVDDLGAAAAGLL------S--HANEALRSVDAEGEEG---- +-D--GD------------RS-SQPSD--SA-SGASWRSSLP---SKKYTR +FEAQVLALRADPTTFTEEPEDAEGF--TRWQEAFNLDE--RKEEIDG--- +-VLRESPGLES----------FVERLVPSVVAYDTFWCRYF---FAVD-K +LRQAEDVRTKLVSR---------------AMSKEDEE---ELSWEV--DD +----EE------------EDSNGDRKEDADT-TVDKKE-EQIDQP----- +VSHEAKGHGKQT-------------------------------------- +-------------------------------------------------- +------------A-VDGEIVVEDKETPL-AARNDDSGEHNGEALIPTPSS +V---TG--REE-----------KTEP-SDSSKESDLSVVSQ-PSMLE-E- +DISWEEIEDV----------------------------GDQDEKKGA--S +--PR------------SSSTSK--AEDIRKRLNS---------------- +-------------V--EDDEELSW---------------DV--------- +--------------------------------DE---------------- +----------------------------- +>29 +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +----------------------------------MSEFGNQV-DI-MS-- +---SI-ACTTDGSEL---FS----KHVNGL----LLHVDTLLVANAILMG +VIVGLG-------AYRHRYRHHPLIRFIYLGATTLFLPI--VSYVTST-- +-----LE-NPY-TP--IV------YV--AG----NRFVTANCYTD-DHVT +LVVLWIGLVQIVGTNATAIVAS--DS-REG---RSI--APPAVQLVQAIW 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+-------------------------------------------------- +-------------------------V--- +>21 +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +----------------------------------------MAAALSCS-- +-----LRCWTITG---------------------------H----HRLLR +VV-V-F-------LLLSLHHQASSLNFHYD--YINTTNK--ADFGSLGDD +C--N-IS-DHR-AE--LT----------SHS--DQ--NYINNLGRLVFPN +AMQLWDPATGDTASFSTAFSFGI-EA-LPG---MEV-------------- +-----------------------------------------------GH- +-GMAFFLTGAPVGTASNVPTN--SFGGFLA----LFGPD---ILTSRGNA +TGSGGDDYRIVAVEFDTVKDDW-D---PS----------AR-HI--GVDL +NNISSSL-GNYMVL--PDDSL-V-GRVMSARI---------DYNGSTGRL +DVVLR-NGS--------SSDDGNTTYAHSTIVDLRSVLPPQVVVGFSA-- +-ATSKDRVALQYVLSWSFST---TSPVGNGTSAQPQQRR--------RHT +GSTQVLV------GVTVAAVLA-LL-LGT-FVGALLWRSRRRRSDD---- +-DD--ESSD---EVSSGEEDDDGSW--AME-EDLESGAGPR---PFRLR- +------KLRAATGNFSEEEKLGQGASGSVYRGRVDDL-----DVAIK--- +-VFSRGGSAQGKREYTAE-VTAISRLRHRNLVHLIGWCHGRKKLLLVYEL +AADE-AL--------------------------------------L--R- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +----------------------------------GEMGFDAREMERV--L +VVGLWC--AHP-------------------DAAARPSIREAV-EALRSG- +EAAKLPALPPRMPVAMYVQP-YYDPAESERYVV---YDTTTLTA--TTSV +TAEY------------NYRTSS--RDYSTLYSTS-G-------------- +-------------IP-P-VGSKQSV------------------------- +--------------R--------------LLRGR---------------- +----------------------------- +>12 +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +----------------------------------------MAP------- +------------------------------------------------R- +--------------------QPLLPSFLYA-----PS------------- +-------------------------------------------------- +-----------SSGG---------AG--F--------------------- +-------------------------------------------------- +-GSAQ-EAA----VVAGAPS--EPPFGKIEMFSPAYY------------A +ACGFGGAA---------------A---CG----------LT--------- +---------HAAVT--PLD-V-IKCNIQIDPA---------KYKSTSSAF +SVVLK-EQG---------V----RGF-------YRGWAP--TFLGYSA-- +-QGAFKYGLYEVFKKEYSDM---AGPEYAAK------------------Y +KTLIYLA------GSATAEVVA-DVALCP-MEAVKVRVQTQPGYAR---- +-G-----L--------RDGF-PKIVR--AE-GYAGLFRGMV---PLWGR- +------QIPYTMMKFATYENIVE----MAYKHVIPTP----KDQCSK--- +-PLQLG-------------------------------------------- +-----------------------------------VS---FGSGYI--AG +-V--FCAA-----------ISH----PAD--------------------- +---------------------------------------NLVSF------ +---------------L---N-------N-------AKGAT-----VG--- +---DAVKNL-GLWG-----------------------LFTRGLPLRI--L +MIGTLT-------------------------------------------- +-----------------------------G-------------------- +---T------------QWVIYDSFKVMAGLPTTG-G-------------- +--------------A-------PAP------------------------- +----------------------------AAVPKE---------------- +----------------------------- +>10 +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +----------------------------------------MAVLKLVA-- +-------------------------------------------------- +---MAV-------LICVHVHHSAAVSFSYS-----SFSS--VDFREE-DD +A--R-ITAAGR-IE--LL----------GDE--S----GGRARGRVVYKK +PVQLWDGVTGEATNFTATFNVNI-TS-LPG---RSS-------------- +------------------------------------------SA--VGH- +-GMAFFLAPY----MPDLPQE--SYDGCLGLFDESLIQPAQQNGTTAPIP +SANATGGARFVAVELDTHRDAW-D---PS----------GR-HV--GVDV +NSVDS-R-GNYVIL--PDASL-VDAGVMSVTV---------SYDSAMTSL +DVALV-VGA------------TGATYRLAAVVDLRSLLPEQVAVGFSA-- +-ATGDMFASDHAVLSCSFHS---TLATRNNNTST-SS-S--------SKK +ATVLLHV------GVTAAAVLV-LL-LGL-TVGLLLRRASRRPPDN---- +-E--KKDM------LAGDED-DDSL---DD-DEFGSSTGPR---SIPYA- +------QLAASTEDFAEERKLGQGGSGSVYRGHMEELDDGRRDVAIK--- +-VFLRGASLEGRKEYRTE-VTVISRLRHRNLVQLIGWCHGRRRLLLVYEL +VHHG-SLDRYLYGSK-QET--LTWQLR--YQIILGLA---SAVLYL--HQ +-E--WDQC-----------VVHGDIKPSNIM-LDESF-NT----KL-GDF +GLSRLIDHGMSLQTMTAMAGTPGYLDPECVISGKASTESDVYSF------ +----GI----TLLEIA---CGRRPMAP-P------SADG-------K--- +---QVFRLLEWVWDLYGRG-----AALDA-ADQRLGGTFDRWEMERV--V +AIGLWS--AHP-------------------DPKMRPAIRQAA-EALQS-- +RKFRMPVLPPRMLVAVYLQP-FGAST--MEY-GYGGDSNTTVGS--SVT- +---M------------QCSLTS--QTTATQSSNS-S-------------- +-------------VP-A-GDS----------------------------- +--------------------------------SQ---------------- +----------------------------- +>19 +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +----------------------------------------MDERSYICAL +LYNILLCPVETSSQV----------------------TT-A----MAGL- +-K-LYLFSSRAACFLLLCVHHATAISFNYD--N--SFSS--DDFREE-DD +A--S-IT-NGR-IE--LL----------GDE--A----NARARGRVLYKQ +AVQLWDGVTGEAASFTASFNFSI-QS-LPG---RSS-------------- +-------------------------------------------T--PGH- +-GMTFFIAHY----MPQLPQD--SYDGCLGLFDERHAPK---DGT--TAI +STNASGSASFVAVEFDTHRDAW-D---PS----------SR-HI--GVDV +NNVDS-R-GNFEIL--PEGSL-VDAGVMSSTV---------NYDNATARL +DVDLR-VIG------------TGARYTLSATVDLRSLLPEQVAVGFSA-- +-ATGDAFFSYHTILSCSFKS---TLPTRNDAP-FPSTSS--------TKK +ATLQLSA------GVGAAAVLV-LL-LAV-TVAVLLRRASRRNRQE---- +-PEVDKDM-----LAGDMTP-DSLDA-AAD-DEFGSSTGPR---PIPYA- +------NLAAATGNFAEEGKLGQGGSGSVYRGHMKEVG--GRDVAIK--- +-VFLRGASLEGRKEYRSE-VTIISRLRHRNLVQLIGWCHGRRRLLLVYEL +VRNG-SLDGYLYSK-DDLI--LTWQLR--YQIIVGLA---SAVLYL--HQ +-E--WDQC-----------VVHGDIKPSNIM-LDESF-NT----KL-GDF +GLSRLIDHGMSLQTMTAMAGTPGYLDPECVITGKASTESDMYSF------ +----GV----TLLEIV---CGRRPMAP-P------TGGAR-----DG--- +---QVFRLLEWVWELYGRG-----AALDA-VDERLGGVFDRWEMERV--V +AVGLWS--AHP-------------------NPKMRPAIRQAA-EALQS-- +RKFRMPVLPPKMPVAVYLQP-FGDST--MEY-G---DSTTTVGS--GFT- +--TQ------------HYSSTS--RTTATQSSDTTS-------------- +-------------MP-A-TVS---E------------------------- +--------------E--------------LNSNI---------------- +----------------------------- +>39 +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +----------------------------------------MAS------- +------------------------------------------------R- +--------------------QSMLPSFLYT-----SS------------- +-------------------------------------------------- +-----------SGAGM------P-GG--W--------------------- +-------------------------------------------------- +-GAAQ-EAPV---VVAGAPS--EPPFGKIDMFSPAYY------------A +ACGFGGAA---------------A---CG----------LT--------- +---------HAAVT--PLD-V-IKCNIQIDPA---------KYKSISSSF +SIVLK-EQG---------V----RGF-------FRGWAP--TFLGYSA-- +-QGAFKYGLYEVFKKEYTDM---AGPEYAAK------------------Y +KTLIYLA------GSATAEVVA-DVALCP-MEAVKVRVQTQPGYAR---- +-G-----L--------RDGF-PKIVR--AE-GYAGLFRGMV---PLWGR- +------QIPYTMMKFATYENIVE----MAYKHLIPTP----KEQCSK--- +-PLQLG-------------------------------------------- +-----------------------------------VS---FGSGYI--AG +-V--FCAA-----------ISH----PAD--------------------- +---------------------------------------NLVSF------ +---------------L---N-------N-------AKGAT-----VG--- +---DAVKNL-GLLG-----------------------LFTRGLPLRI--V +MIGTLT-------------------------------------------- +-----------------------------G-------------------- +---T------------QWVIYDSFKVMVGLPTTG-G-------------- +--------------T-------PAA------------------------- +----------------------------APREEA---------------- +----------------------------- +>33 +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-----M--LTLQHSIIG-RMVVFFLRVCQH-------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +----------------------------LQLVL-MFEFDMCVKQI-MG-- +---VG-NCSDQAITD---FS----KHIDGQ----LMRVNALLVASTIVIG +VIVGIG-------AYGQRYRHHPLTSFLFLGATTLFVPI--LSYVVST-- +-----VD-SNL-GV--VT------IS--SD----AHIIPGWCSTR-SHIY +TVFVWASLVQIAGANTTTIVAG--DD-NKG---RNI-TLPGTVLLVQAIW +TSYIVVYYLGGGYY-----------ST---------R-QWSIKH--MDL- +-ANGLPVLPLFSLLI----AK--LLLKYYAWYGASR-------------- +SLAFGRNPHFIVGYMEQLKAKLTS----------------E-HS--LPPL +--IVT---GEDTTL--VQK-E-PHGYSIKWLFNQADGTG--IDNNNLVTT +DKVW-RLEDDIF-PRYSTKQL----KDICFSFALFK-LLRCRFTRHTI-- +-AEFGFIKAHNLLSHVLLQ-D--VDDERP-----LGMIAHELSFLHDYYY +SSLPTSY------SSSWLPILS-IS-ISLLTMGLSLLYLLLITVVI---- +-LLY--AFM---GWP-----H-HGQM-QCF-LNFHPSFQNE---HEDFF- +------YSSSNQIQYGNIFFDLAPVGLLAALVVLSEV----REIACY--- +-ICSNWTKVFLICSYVRHASSWQKSHWKKKMLSLVLRRKCK-LLNHWVDK +MNQC-SVLALHPST--TPV------PL--LGRLIPLL---H----R--KK +----VPRA-----------VKAAL-----LK-PLRSP-NWKNRSNG-VA- +SLCTRLQLQADNNPLSTSNGVKGVADTMLVAHIATSILEVRTS------- +--EPLR----QA--DS---ANEIAATH-------LSRYCA-----YLVAY +VPDLLPDNNEWCKSLYKGIKKKAKRALA-ASG----NTGQASLSPEA--L +VQALSAGSEEAHD------------LLKN-GAELGKKLVELA-GNEG-E- +EVAWELLAEFWSEMILYAAP-S-DNV--AA-HA---EAIARGGE--L--I +--TL------------LWALLTHL---------G-F-------------- +-------------I--SRPEAA--MP------N-----TPGD-------- +-------------------------------------------------- +-------------------------V--- +>53 +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +----------------------------------------MLLAPALL-- +-----LCRSQSSSEL---------------------RAT-A----MAVL- +---KLC-------LCLMLVHHAAAV----------SFSP--GDFRAE-DD +A--R-IT-DGR-ID--LL----------GDKNFP----GCRARGRVLYKQ +PVQLWDA-TGEAASFTASFNFTI-QS-LDG---GKG-------------- +-------------------------------------------G--PGH- +-GMAFFLAPY----MPEMPQE--SYEGCLGLFDETAN------------- +MASASGSARFVAVEFDTHRDPW-D---PS----------SR-HI--GVDV +NSIDS-R-GNFLIL--PDDSL-VDAGVMSSTV---------KYDNSTTRL +DVVLS-VGD--------------TTYNLSATIDLRSLLPDQVSIGFSA-- +-ATGAAFGSNHTVLSCSFQS---TLPTVTTS--T--PL---------PST +WSTKLIA------GVAAAAVLV-LL-LGV-TVAVLLRRASRRNGQP---- +-D--DKDM-----MLAGDMT-PDSLD-MDD-DEFGSSAGPR---PIPYA- +------NLAAATRNFAEEGKLGQGGSGSVYRGHMKELG--GRDVAIK--- +-VFSRGASSEGRKEYRSE-VTIISRLRHRNLVQLIGWCHCRRRLLLVYEL +VHNG-SLDGYLYSKSKEEV--LTWQVR--YQITLGLA---SAVLYL--HQ +-E--WDQC-----------VVHGDIKPSNIM-LDESF-NT----KL-GDF +GLSRLIDHGMSLQTMTGMAGTPGYLDPECVITGKASTESDMYSF------ +----GV----TLLEIV---CGRRPMAP-P------RDGAK-----DG--- +---QVFRLLEWAWDLYGRG-----AALDA-ADEHLGGVFDRWEVERV--V +AVGLWA--AHP-------------------DPKMRPAIRQAV-EALQS-- +RKFRMPVLPPKMPVAVYIQP-FAAST--MEY-S---DTTTTVGS--S--- +--------------------NS--RTTATQSSNT-S-------------- +-------------MP-A-AVS---E------------------------- +--------------E-----------------LV---------------- +----------------------------- +>58 +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------MDNFFNSVFSAAAA--GEHEEE-E- +-GEEEER-EGE-AAER---------DGGGDS--G----GGWSFGGLMKTL +AEEIEGQREEQEEGGQGGKAAA--EE-VQGEEAG-G-------------- +------------------------------------------SG--GGW- +-SFAGLIKTL----AEDLPQRDEQEAAEDEDDE----------------- +----------------------------------------R-EA--EAPE +EEEVG-E-----DG--VSGGG-WSFGGLVKT------------------- +----------------------------------FTSRSESVLEGYRRDL +QDLGSGLRVETTALRAAAAR---AAAALPGALEA-GAS---------VAS +DRLESVGQAVDDLGAAAAGLL------S--HANEALRSVDADGEDG---- +-T--GD------------GS-SQLSE--SA-SGASWRSSLP---SKKYTR +FEAQVLALRADPTTFTEEPEDVEGF--SRWQETFSVEE--RKDEIEG--- +-VLRESPGLES----------FVERLVPSVVAYDMFWCRYF---FAVD-K +LRQAEDVRTKLVSR---------------AMSKEDEE---ELSWEV--DD +----DE------------DDNQGDHKQGTVT-IPEKKE-EQIDDS----- +VSHEAEVEGKQE-------------------------------------- +-------------------------------------------------- +------------V-VNEKCAAEDQAMIF-AATKDDNGESSGEASPPKSSN +G---IG--QEE-----------NTEA-GDLCKESDLSLMSR-PSVQE-E- +DLSWEEIEDV----------------------------DDQGEKKGG--S +--PW------------SSPSSK--VEDIRKRFNS---------------- +-------------V--EDDEDLSW---------------DV--------- +--------------------------------DE---------------- +----------------------------- +>2 +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +--------------------------MNFFSSVLSAAGV--GGDEHE-E- +---ERGE-GEE-AAAEQG------EEGEAES--G----GGWSFGGLIKTL +AEEIDVRPRDEQEAEEGGEEVAEGKG-EVEEEA--D-------------- +------------------------------------------AG--GGW- +-IFGGLIKTL----AEEIEEQRKVNSQLEAEEEAA--------------- +---------------------------------------AA-AA--AAAA +AAAEEEG-GETAGS--GDGGE-WSFGGLIQT------------------- +----------------------------------FATRSESVLEGYRRDI +QDLGSGLRLETATLRAAAAR---AAAAFPGALEA-GAS---------AAS +NRLESVGQAVDDLGAAAAVLL------S--HANEALRSVDADGEDG---- +-A--GD------------GS-SHPSDSASA-SGASWRASLP---SKKYTR +FEAQVLALRADPATFTEEPEDADGF--AKWRDAFRIDE--RKEEIEG--- +-VLKESPGLES----------FVERLVPSVVDYDMFWCRYF---FAVD-K +LRQAEDVRTKLVTR---------------AMSKEDEE---ELSWDV--DD +----DDE-----------DDDNGDHKEGANT-VVNKKE-EQIEEP----- +VSHKTEDD-KQ--------------------------------------- +-------------------------------------------------- +------------G-ADTPDVSEDKKTTL-AAEKDGNGESKDEVAAPKSSN +D---MG--REE-----------KI----DSSKESEFSAASP-PSAQE-E- +DLSWEEIEDV----------------------------GDEDEKKKP--I +--PR------------SSPPSK--AEDIRKRFSS---------------- +-------------V--EDDEELSW---------------DI--------- +--------------------------------DE---------------- +----------------------------- +>4 +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +--------------------------------------MSMS-GP----- +---RE-ACDVTGLDE---FY----KRMQAR----VWRTRGQLIFAAAVVT +ILVGSG-------VYSRRHRRHGFARFVFLGASTLYLPV--VSYLVSD-- +-----IG-GEN-CG--LP-------K-----------DVKECK-D-MSAF +FLEAWAILALIFGANSFVIAAA--DD-HGG---QNV-HRPVAELLVRAIW +TSYISVHHFRIIF--P---------------------------------- +-LDRVFISMSCGFVL----VR--IVVKLYAFLKAQR-------------- +SFAHGRNPRLIAGYMDQLKQDIMSS-S-SSSHHAQ----AV-NV--ALPL +--LVM---GEDEQQ--VEEG--PHGYRFRDRK----------GNESLVTI +GKVQ-IMSST-DGVLSSWPPL----KDLCLSFSLFK-LLRRRFARCVV-- +-VEEGSEIGPNMVCTLFDSD---TEPERI-----VSIVADELSFACDFYH +SSLPVSC------SVFWLFVLN-IL-FSFAGTACCLFIAIRTIQHVVSVA +QVG--P-MS---SDP-----F-YHQI-TCV--LIC--GKN---------- +-------DQAKQ--FGSILFFMVLSFLFVIVLIFDEV----WEIVSY--- +-MCSNWTKVTLICYYITK-PTWQQSPRMRRLIRCVLQFRCNLLG-YWSDK +MGQT-SLMDTNMNI--GPI------V--RIKQLLGLP---V----QTKQV +-K--IPTE-----------VKAAI-----IN-TLKSQ-NW----RP-TD- +CITSLQQSHIGKSFSWACKGD-GTSDVILVWHIATCIFEIRHS------- +--TEPL----IA--DS-I-SNKITATY-------LSQYCA-----YLLSS +ASELLPDDKAWSKKSYESVKKIVDPIFS--------GRNDKPLEYEY--I +LLLLVE--KSR----------SDM-ILNK-GLTLGKQLVEGI--E-D-E- +EMGWTVLAGFWSEMILYIAP-S-DNI--DA-HR---RAIARGEC--S--Y +--SIPTTTPKKIDVRFIVVVISYA---------T-LLVIDVRFIVLAVFP +FIALAFIAALCVAL--IRAEADNGGE-----PGASSSSASSAAATDREGN +KNTTTTAAEEAEQLTAMSVVPYWALCVTGHGPRHGPRRHPVSPLPQRHTG +RAGPDADEAQLAVRRRRGSGRRAGVA--- +>6 +-------------------------------------------------- +---------------------------MAGLGMLVE-------------- +--ALRD-------------------------------------------- +----------------NFGAFIGS-LVDF--------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +---------------------------WSDCHNKVARSIKAI-MS----- +---ST-TCGFRS-ND---LI----ERINKD----VLTTNALFVANAFLVV +ILVGAG-------SYGRRYRHIALNRYLFLGASTLVLPI--LSYVVSY-- +-----VG-RDK-YY--NL-------F-----------HGLECV-D-NRAF +CLLLWAALLPMVGMNTSSILTA--VH-NGN---E-E--LP---------- +-------------------------------------------------- +---DIIISTLLGLGF----IK--IILKFVAYGRARR-------------- +SFAMGQNPSLIAGYMEELYRLQVSE-V--AE---V----TI-QR--LLAL +--VVM---GEDKQQ--IEKG--PHGYHFKRSTFSQNGTSAMTSNGNLVTI +DKVW-HLAEMNDALLGPRPAL----KHLCMSFSLFK-LLRRRFARYPL-- +-VEAGSEKAFHFVRGILLTDGADADPEAV-----FRVITDELSFAWDFYY +SSHPISH------LGKWLPIMS-IM-TSLFTMAFCIFIVITLAWKILP-- +-------EY---KD--------YRVM-SCE--LTC--GEQ--------D- +------NDRFHD--IGSILFVLVPTISLLLVVLLGEV----WEIISY--- +-VCSNWTKVTLVCAYTAK-PSWQKSRIMRRLIACFLWCRCKLMN-YWGDK +MGMT-SLLDPCKRK--GH-----------IRHLFRLS---K----AMKPT +-K--IPKP-----------VKAAL-----IN-SLKGS-NG----QL-SN- +GIASLQKCHLRDDIRWACNGE-GTSDIILVWHIATCIFEIRHM------- +--HDPSERHSSP--DE-N-DDMITAIH-------LSKYCA-----YLLAS +CPELLPDDTPWSKELYKSAKKITDSVLG--------STDMRCFEFDR--M +MQLLSE--KSK----------SNE-VVCK-GVQLGKQLVDGI--Q-N-E- +NKGWNMLAEFWSEMMLYVAP-S-DNT--KA-HA---KAIARGGE--L--I +--TI------------LWALLTHA---------G-I-------------- +-------------I--RRPEHDN--------------------------- +-------------------------------------------------- +------------------------VV--- +>9 +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +----------------------------------------MALSDRS--- +------------------------------------------------R- +--------------------ESLLPSFLYT-----SS------------- +-------------------------------------------------- +-----------AARSF------A-TG-ATR---FPS-------------- +------------------------------------------PV--S-P- +-ASPA-PGA----VGGGAPISIQAPREKIEMYSPAFY------------A +ACTAGGIA---------------S---CG----------LT--------- +---------HMAVT--PLD-L-VKCNMQIDPA---------KYKSITSGF +GVLLK-EQG---------P----RGF-------FRGWVP--TLLGYSA-- +-QGACKFGFYEFFKKYYSDI---AGPEYAQK------------------Y +KTLIYLA------GSASAEVIA-DVALCP-FEAVKVRVQTQPGFAR---- +-G-----L--------SDGL-PKFVR--SE-GALGLYKGIV---PLWGR- +------QIPYTMMKFASFETIVE----MIYKHAVPVP----KSECSK--- +-SFQLG-------------------------------------------- +-----------------------------------IS---FAGGYI--AG +-V--FCAI-----------VSH----PAD--------------------- +---------------------------------------NLVSF------ +---------------L---N-------N-------AKGAT-----VG--- +---DAVKKL-GLWG-----------------------LFTRGLPLRI--V +MIGTLT-------------------------------------------- +-----------------------------G-------------------- +---A------------QWGIYDAFKVMVGLPTTG-G-------------- +-------------VT-PAPGAAEKA------------------------- +----------------------------LQAS-A---------------- +----------------------------- +>14 +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +----------------------------------------MAVLLNPS-- +-----SSSSSKATPR---------------------PPQ-Q----QQLL- +-L-LLL-------HLLLVAVPATSLTFSYD--A-DSFVS--EDFRQE-DD +A--M-VT-AGR-IE--LL----------GEE--F----AARARGRALYKR +PVQLWDGATGEEASFAASFNFTI-RS-VAG---RGN-------------- +------------------------------------------AL--AGH- +-GMTFFLAPF----MPDMPQE--CYEGCLGLFDQSLTRN----TA--SAT +MGNASGAASFVAVEFDTHMDGW-D---PS----------GR-HV--GVDI +NNVDS-RRGNYVVL--PEDSL-VDAGVMSATV---------SYDSGARRL +DVALA-IGG--------GA--ATATYNLSAAVHLRSVLPEQVAVGFSA-- +-ATGDQFASNHTVLSFTFSS---TLPTRTTNPPQ-PST---------SSA +KTAHLSA------AVAAAGIAL-QL-LVL-AITILIRRARKRRRRD---- +-D--GVS-----------YD-DSIDD-DDE-EDMESGTGPR---RIPYA- +------HLAAATGGFAEIGKLGEGGSGSVYGGHVRELG---RNVAIK--- +-VFTRGASMEGRKEYRSE-VTVISRLRHRNLVQLMGWCHGRRRLLLVYEL +VRNG-SLDGHLYSN--KET--LTWPLR--YQIINGLA---SAVLYL--HQ +-E--WDQC-----------VVHGDIKPSNIM-LDESF-NA----KL-GDF +GLARLIDHGMSLQTMTAVAGTPGYLDPECVITGKASTESDMYSF------ +----GI----VLLEVA---SGRRPMVVTPRAAAATAGGGKDDDDGGG--- +---QVFRLVEWAWELYGRGDDDQ-SSLDAIADTRLGGAFDRWEMERV--V +GVGLWC--AHP-------------------DPKARPAIRQAA-EALQS-- +RKFRMPVLPPRMPVAVYLQP-FAAST--MKYYG---DSMTSVGS--EVV- +---G-------------YSSTS--LATATLSSSS-S-------------- +-------------LP-S-AMA-N-N------------------------- +--------------DSLSP-------------RE---------------- +----------------------------- +>18 +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +----------------------------------------MALSDRS--- +------------------------------------------------R- +--------------------ESLLPSFLYS-----TA------------- +-------------------------------------------------- +-----------GARPY------T-AG-GGG---AAF-------------- +------------------------------------------RL----P- +-AAAA-PGG----VGGGAPIEIQAPREKIEMYSPAFY------------A +ACTAGGIA---------------S---CG----------LT--------- +---------HMAVT--PLD-L-VKCNMQIDPA---------KYKSITSGF +GILAK-EQG---------V----RGF-------FRGWVP--TLLGYSA-- +-QGACKFGFYEFFKKYYSDI---AGPEYAQK------------------Y +KTLIYLA------GSASAEVIA-DVALCP-FEAVKVRVQTQPGFAR---- +-G-----L--------GDGL-PKFIK--SE-GALGLYKGIV---PLWGR- +------QIPYTMMKFASFETIVE----QIYKHAVPVP----KSECSK--- +-SFQLG-------------------------------------------- +-----------------------------------IS---FAGGYI--AG +-V--FCAI-----------VSH----PAD--------------------- +---------------------------------------NLVSF------ +---------------L---N-------N-------AKGAT-----VG--- +---DAVKKL-GLWG-----------------------LFTRGLPLRI--V +MIGTLT-------------------------------------------- +-----------------------------G-------------------- +---A------------QWGIYDAFKVMVGLPTTG-G-------------- +-------------VT-PAPSTSDAG------------------------- +----------------------------LKAVSA---------------- +----------------------------- +>26 +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +----------------------------------------MAAGVLMT-- +-----KPFM-AAA---------------------------A----AALVS +-L-LVM-------LRCLPSVVATTVSFNYS-----SFSNASKNITLQGSA +A--L-AG-AEW-IE--LT----------KGK--GNNLSSGGTMGRMVYTP +PVQLWDAATGEVASFTTRFSFNI-TP-KNK---SNK-------------- +-----------------------------------------------GD- +-GMTFFLVSY----PSRMPYM--GYGGALGLTSQT--------------- +FDNATAGDRFVAVEFDTYNNSFLDP-DAT----------YD-HI--GIDV +NALRS--V-KTESL--PSYIL---IGNMTAIV---------DYNSNSSIM +SVKLWANGS------------T-TPYNLSSKVDLKSALPEKVAVGFSA-- +-ATGSSFE-QHQLRSWYFNL---TLEQKQPT-----GQ-----------H +SRGGVVA------GATVGAILFIVL-LFT-MVAILVRRRQRKKMRE---- +-E--EED-----------DS-EG----DPI-VEIEMGTGPR---RFPYH- +------ILVNATKSFAAEEKLGQGGFGAVYRGNLREL---GLDVAIK--- +-RFAKDSSKQGRKEYKSE-IKVISRLRHRNLVQLIGWCHGRDELLLVYEL +VPNR-SLDVHLHGN--GTF--LTWPMR--INIVLGLG---NALLYL--HE +-E--WEQC-----------VVHRDIKPSNIM-LDESF-NA----KL-GDF +GLARLIDHNVGVQTMTHPSGTPGYLDPECVITGKASAESDVYSF------ +----GV----VLLEVA---CGRRPMSL-L------DNQN-------N--- +---SLFRLVEWVWDLYGQGV-----VLKA-ADERLNNDYDATSMECV--M +AVGLWC--AHP-------------------DRYARPSIRAAM-TVLQS-- +N-GPLPVLPSKMPVPIYAPP-MASSE--GQL-S---SSTGMSSS--S--- +------------------------LTI----------------------- +----------------T-SIT----------------------------- +--------------------------------PR---------------- +----------------------------- diff -r 000000000000 -r 304d1a82708f test-data/out.tabular --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/out.tabular Fri Nov 11 06:57:26 2016 -0500 @@ -0,0 +1,40 @@ +90 646D9MD9M3D2M4D6M4D22M7D4MD21M2D7M7D2MD3MD2M2D2M6D2M2D2M4D11MD26M2D2MD3M3D3M2D39M9DMD6M2D3M2D14M4D2M2D13M14D24M4DM5DM4D2MD2M2D4M2D3M3D6M2D3MDMD10M10D12MD7M2D7M4D11MD11M3D18MDM2D6M5D23M6D9MD2MD20M5D2M2D4M3D3M5DMD4MD3MD10M3D5M7DM2D28M4D6M4D17MD22MD12MD9M2D3M6D2M2D5M2DM3DM4DM2D2MDM2D4M11D5M5D2MD5MD8MD2MD43M10D3M4D2M2D2M3D8M7D6M5D33MD2M7D9M2D7M2D3M10DMDMD4MD12M2DMDMD21MD2MD3M2D2MD2M3D8M2DM2DM2D2M12D8M9DMDM27DM2D10M5D2M5D2M85DM3D +52 787D8MD26M2D2MD3M3D3M2D24M39D14M4D2M2D13M14D25MDMD13MDM2D5M2D3M3D6M2D3MDMD3M113D11M193D5M107D7M132D4M2D7M2D3M11D2MD4MD11M5DMDMD20MDMD3M2D2MD2M3D8M2DM2DM2D2M12D8M9DMDM27DM2D9M7DM5D5M17D5M60DM3D +48 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