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comparison fasta_header_converter.xml @ 3:dd268de3a107 draft

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planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/TreeBest commit 988b1fc1cb8739e45648465adbf099f3fdaf87f8
author earlhaminst
date Fri, 03 Mar 2017 07:22:53 -0500
parents 4f9e5110914b
children
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2:7ea4df039a53 3:dd268de3a107
1 <tool id="fasta_header_converter" name="FASTA header converter" version="0.1.1"> 1 <tool id="fasta_header_converter" name="FASTA header converter" version="0.1.1">
2 <description>to append species information</description> 2 <description>to append species information</description>
3 <command> 3 <command detect_errors="exit_code">
4 <![CDATA[ 4 <![CDATA[
5 python '$__tool_directory__/fasta_header_converter.py' 5 python '$__tool_directory__/fasta_header_converter.py'
6 -f '$fastaFile' 6 -f '$fastaFile'
7 -j '$genesFile' 7 -j '$genesFile'
8 > '$outputFile' 8 -o '$outputFile'
9 ]]> 9 ]]>
10 </command> 10 </command>
11 <inputs> 11 <inputs>
12 <param name="fastaFile" type="data" format="fasta" label="FASTA file" help="FASTA file with transcript ID as FASTA ID" /> 12 <param name="fastaFile" type="data" format="fasta" label="FASTA file" help="FASTA file with transcript ID as FASTA ID" />
13 <param name="genesFile" type="data" format="json" label="Gene feature information" help="In JSON format" /> 13 <param name="genesFile" type="data" format="json" label="Gene feature information" help="In JSON format" />