Mercurial > repos > ebi-gxa > decoupler_pathway_inference

annotate test-data/progeny_test_2.tsv @ 8:9864fd2cc1f0 draft

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planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 03b4d647e2dd8a333f347d3cfbe3dd5c7b407f61
author ebi-gxa
date Wed, 30 Oct 2024 14:01:19 +0000
parents 77d680b36e23
children
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77d680b36e23 planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 1034a450c97dcbb77871050cf0c6d3da90dac823
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1 source target weight p_value
77d680b36e23 planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 1034a450c97dcbb77871050cf0c6d3da90dac823
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2 Androgen TMPRSS2 11.490631 0.0
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3 Androgen NKX3-1 10.622551 2.2e-44
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4 Androgen MBOAT2 10.472733 4.6e-44
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5 Androgen KLK2 10.176186 1.94441e-40
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6 Androgen SARG 11.386852 2.79021e-40
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7 EGFR LZTFL1 -1.8738769 2.0809955e-18
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8 EGFR PHLDA2 3.5051384 2.0530624e-17
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9 EGFR DUSP6 12.6293125 6.537324e-17
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10 EGFR DUSP5 7.9430394 6.86669e-17
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11 EGFR PHLDA1 6.619626 3.4106933e-16
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12 Estrogen GREB1 17.240173 0.0
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13 Estrogen RET 10.718027 0.0
77d680b36e23 planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 1034a450c97dcbb77871050cf0c6d3da90dac823
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14 Estrogen TFF1 14.430255 0.0
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15 Estrogen HEY2 11.482369 3.1e-44
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16 Estrogen RAPGEFL1 10.544896 5.2e-43
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17 Hypoxia FAM162A 8.335551 0.0
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18 Hypoxia NDRG1 22.08712 0.0
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19 Hypoxia ENO2 14.32694 0.0
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20 Hypoxia PDK1 13.120449 0.0
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21 Hypoxia ANKRD37 8.484976 0.0
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22 JAK-STAT OAS1 15.028714 1.058e-41
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23 JAK-STAT HERC6 8.769676 1.3450407e-38
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24 JAK-STAT OAS3 10.618842 1.2143582e-37
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25 JAK-STAT PLSCR1 8.481604 8.955206e-37
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26 JAK-STAT DDX60 12.198234 9.150971e-36
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27 MAPK DUSP6 16.859016 0.0
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28 MAPK SPRED2 3.5018346 0.0
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29 MAPK SPRY2 9.481585 9.19e-43
77d680b36e23 planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 1034a450c97dcbb77871050cf0c6d3da90dac823
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30 MAPK ETV5 5.9887094 6.7425e-41
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31 MAPK EPHA2 6.3140125 3.7492e-40
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32 NFkB NFKB1 9.513637 0.0
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33 NFkB CXCL3 22.946114 0.0
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34 NFkB NFKB2 5.5155754 0.0
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35 NFkB NFKBIA 11.444533 0.0
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36 NFkB BCL2A1 14.416924 0.0
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37 PI3K MLANA -9.985743 1.84e-43
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38 PI3K PMEL -6.5903482 6.8747866e-36
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39 PI3K FAXDC2 -12.421274 3.297515e-34
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40 PI3K HSD17B8 -8.601571 9.948224e-34
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41 PI3K CTSF -9.172143 1.0235212e-31
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42 TGFb LINC00312 4.428987 2.0074443e-17
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43 TGFb TSPAN2 5.502326 3.1451768e-16
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44 TGFb SMAD7 7.6311436 7.3087106e-16
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45 TGFb NOX4 5.913813 3.8292238e-15
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46 TGFb COL4A1 6.3374896 9.052501e-15
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47 TNFa CSF2 8.35548 0.0
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48 TNFa CXCL5 10.0813675 0.0
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49 TNFa NFKBIE 10.356205 0.0
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50 TNFa TNFAIP3 35.40072 0.0
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51 TNFa EFNA1 18.63111 0.0
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52 Trail FRMPD1 -2.2346141 9.378505e-07
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53 Trail WT1-AS 2.2251053 2.0316747e-06
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54 Trail WNT8A -1.8469616 3.795469e-05
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55 Trail GPR18 3.240805 6.1090715e-05
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56 Trail TEC 2.0513217 6.32898e-05
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57 VEGF CRACD -4.87119 6.7185365e-25
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58 VEGF VWA8 -3.6068044 1.4495265e-18
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59 VEGF NLGN1 -5.618075 2.6587072e-18
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60 VEGF NRG3 -5.823747 1.0848074e-16
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61 VEGF KCNK10 2.8833063 1.8129868e-16
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62 WNT BMP4 5.936831 2.511717e-10
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63 WNT SIGLEC6 2.0207362 2.347858e-09
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64 WNT NPY2R 1.3872339 8.666917e-09
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65 WNT CSF3R 1.9323153 3.0219417e-07
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66 WNT KRT23 4.1216116 5.463989e-07
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67 p53 GLS2 6.452465 7.444302e-37
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68 p53 MDM2 8.193488 2.1194304e-35
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69 p53 ZNF79 4.020263 4.5987433e-34
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70 p53 FDXR 11.994496 5.589482e-32
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71 p53 LCE1B 11.813737 7.8095406e-30