Mercurial > repos > ebi-gxa > decoupler_pseudobulk
view get_test_data.sh @ 1:046d8ff974ff draft
planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 45145f380b27c3092e1fa2249adc36d7d6fdf5fe
author | ebi-gxa |
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date | Wed, 27 Sep 2023 01:11:32 +0000 |
parents | 59a7f3f83aec |
children | 893ff9213a34 |
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#!/usr/bin/env bash BASENAME_FILE='mito_counted_anndata.h5ad' MTX_LINK='https://zenodo.org/record/7053673/files/Mito-counted_AnnData' # convenience for getting data function get_data { local link=$1 local fname=$2 if [ ! -f $fname ]; then echo "$fname not available locally, downloading.." wget -O $fname --retry-connrefused --waitretry=1 --read-timeout=20 --timeout=15 -t 3 $link fi } # get matrix data mkdir -p test-data pushd test-data get_data $MTX_LINK $BASENAME_FILE