Mercurial > repos > ebi-gxa > decoupler_pseudobulk

view get_test_data.sh @ 1:046d8ff974ff draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 45145f380b27c3092e1fa2249adc36d7d6fdf5fe
author ebi-gxa
date Wed, 27 Sep 2023 01:11:32 +0000
parents 59a7f3f83aec
children 893ff9213a34
line wrap: on
line source

#!/usr/bin/env bash

BASENAME_FILE='mito_counted_anndata.h5ad'

MTX_LINK='https://zenodo.org/record/7053673/files/Mito-counted_AnnData'

# convenience for getting data
function get_data {
  local link=$1
  local fname=$2

  if [ ! -f $fname ]; then
    echo "$fname not available locally, downloading.."
    wget -O $fname --retry-connrefused --waitretry=1 --read-timeout=20 --timeout=15 -t 3 $link
  fi
}

# get matrix data
mkdir -p test-data
pushd test-data
get_data $MTX_LINK $BASENAME_FILE