# HG changeset patch
# User ebi-gxa
# Date 1588089106 14400
# Node ID 46a523dc303f84409dc5e63ca6d04dd6912d56c1
# Parent  2e446b0cb4377e36333fd51199b0807837e62ec1
"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 660486ba0e1ef2f0195e7c6f75448221ba4640f7"

diff -r 2e446b0cb437 -r 46a523dc303f monocle3-create.xml
--- a/monocle3-create.xml	Tue Mar 03 18:01:33 2020 -0500
+++ b/monocle3-create.xml	Tue Apr 28 11:51:46 2020 -0400
@@ -1,5 +1,5 @@
 <?xml version="1.0" encoding="utf-8"?>
-<tool id="monocle3_create" name="Monocle3 create" version="@TOOL_VERSION@+galaxy1" profile="@PROFILE@">
+<tool id="monocle3_create" name="Monocle3 create" version="@TOOL_VERSION@+galaxy2" profile="@PROFILE@">
   <description>a Monocle3 object from input data</description>
   <macros>
     <import>monocle3-macros.xml</import>
@@ -30,6 +30,7 @@
     <param name="expression_matrix_format" type="select" label="Format of expression matrix">
       <option value="rds" selected="true">RDS</option>
       <option value="tsv">TSV</option>
+      <option value="mtx">MTX</option>
       <option value="csv">CSV</option>
     </param>
     <param name="cell_metadata" argument="--cell-metadata" optional="true" type="data" format="tabular,tsv,csv,rdata" label="Per-cell annotation, optional. Row names must match the column names of the expression matrix. Provide as TSV, CSV or RDS."/>
diff -r 2e446b0cb437 -r 46a523dc303f monocle3-macros.xml
--- a/monocle3-macros.xml	Tue Mar 03 18:01:33 2020 -0500
+++ b/monocle3-macros.xml	Tue Apr 28 11:51:46 2020 -0400
@@ -46,6 +46,7 @@
 	journal = {GitHub repository},
 	url = {https://github.com/ebi-gene-expression-group/monocle-scripts},
       }</citation>
+      <citation type="doi">10.1101/2020.04.08.032698</citation>
     </citations>
   </xml>