# HG changeset patch
# User ebi-gxa
# Date 1573220172 18000
# Node ID 336ae8f0a0b225551e411b2bd1599aa47668fa12
# Parent  40f7a3d18cf4ba9e2420caf0b0c5caa062809519
planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/salmon-kallisto-mtx-to-10x/.shed.yml commit 3fbbd818012005da4513271beda50df98d3c1cde-dirty

diff -r 40f7a3d18cf4 -r 336ae8f0a0b2 salmonKallistoMtxTo10x.xml
--- a/salmonKallistoMtxTo10x.xml	Fri Nov 08 08:32:04 2019 -0500
+++ b/salmonKallistoMtxTo10x.xml	Fri Nov 08 08:36:12 2019 -0500
@@ -5,10 +5,9 @@
       <requirement type="package">pandas</requirement>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
-        file $mtx_file | grep 'gzip compressed';
+        file $mtx_file | grep 'gzip compressed' > /dev/null;
         if [ $? -eq 0 ]; then
             matrixfile=matrix.mtx.gz;
-            ln -s ${mtx_file} matrix.mtx.gz;
         else
             matrixfile=matrix.mtx;
         fi;