# HG changeset patch
# User ebi-gxa
# Date 1601464595 0
# Node ID 3cf0177ed87e5f0feaed71b20323fdcdffab6f6f
# Parent  a57b128ea4f60eba56d064f75c4088d213fe8945
"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit fda35ff3ea8609c4bb5e1fd9e58ba70cd5b5a997-dirty"

diff -r a57b128ea4f6 -r 3cf0177ed87e scanpy-neighbours.xml
--- a/scanpy-neighbours.xml	Tue Sep 29 14:11:29 2020 +0000
+++ b/scanpy-neighbours.xml	Wed Sep 30 11:16:35 2020 +0000
@@ -1,5 +1,5 @@
 <?xml version="1.0" encoding="utf-8"?>
-<tool id="scanpy_compute_graph" name="Scanpy ComputeGraph" version="@TOOL_VERSION@+galaxy2" profile="@PROFILE@">
+<tool id="scanpy_compute_graph" name="Scanpy ComputeGraph" version="@TOOL_VERSION@+galaxy3" profile="@PROFILE@">
   <description>to derive kNN graph</description>
   <macros>
     <import>scanpy_macros2.xml</import>
@@ -51,7 +51,7 @@
       <when value="true"/>
       <when value="false">
         <param name="key_added" argument="--key-added" type="text" optional="true" label="Key added"
-            help="If not specified, the neighbors data is stored in .uns[‘neighbors’], distances and connectivities are stored in .obsp[‘distances’] and .obsp[‘connectivities’] respectively. If specified, the neighbors data is added to .uns[key_added], distances are stored in .obsp[key_added+’_distances’] and connectivities in .obsp[key_added+’_connectivities’]." value='neighbours' />
+            help="If not specified, the neighbors data is stored in .uns[‘neighbors’], distances and connectivities are stored in .obsp[‘distances’] and .obsp[‘connectivities’] respectively. If specified, the neighbors data is added to .uns[key_added], distances are stored in .obsp[key_added+’_distances’] and connectivities in .obsp[key_added+’_connectivities’]." value='' />
         <param name="n_neighbors" argument="--n-neighbors" type="integer" value="15" label="Maximum number of neighbors used"/>
         <param name="n_neighbors_file" argument="--n-neighbors" type="data" format="txt,tsv" optional="true"
                label="File with n_neighbours, use with parameter iterator. Overrides the n_neighbors setting"/>