# HG changeset patch
# User ebi-gxa
# Date 1574249764 18000
# Node ID 9024cf7a9a139e73eb0f1f490a5bd7433aa4fba2
# Parent  9b2072ee4bddb3a9f9b8708853387c52f50f1dfc
planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit 0a162684a5859a53eefb14af11ba8ec64d42b213-dirty

diff -r 9b2072ee4bdd -r 9024cf7a9a13 scanpy-filter-cells.xml
--- a/scanpy-filter-cells.xml	Wed Nov 20 05:50:53 2019 -0500
+++ b/scanpy-filter-cells.xml	Wed Nov 20 06:36:04 2019 -0500
@@ -1,5 +1,5 @@
 <?xml version="1.0" encoding="utf-8"?>
-<tool id="scanpy_filter_cells" name="Scanpy FilterCells" version="@TOOL_VERSION@+galaxy2">
+<tool id="scanpy_filter_cells" name="Scanpy FilterCells" version="@TOOL_VERSION@+galaxy3">
   <description>based on counts and numbers of genes expressed</description>
   <macros>
     <import>scanpy_macros2.xml</import>
@@ -12,15 +12,15 @@
     --gene-name '${gene_name}'
 #end if
 #if $parameters
-    #set pars = ' '.join(['--param c:{name} {min} {max}'.format(**$p) for $p in $parameters])
+    #set pars = ' '.join(["--param 'c:{name}' {min} {max}".format(**$p) for $p in $parameters])
     ${pars}
 #end if
 #if $categories
-    #set cats = ' '.join(["--category c:{name} '{negate}{values}'".format(**$c) for $c in $categories])
+    #set cats = ' '.join(["--category 'c:{name}' '{negate}{values}'".format(**$c) for $c in $categories])
     ${cats}
 #end if
 #if $subsets
-    #set subs = ' '.join(['--subset c:{name} {subset}'.format(**$s) for $s in $subsets])
+    #set subs = ' '.join(["--subset 'c:{name}' '{subset}'".format(**$s) for $s in $subsets])
     ${subs}
 #end if
     @INPUT_OPTS@