# HG changeset patch
# User ebi-gxa
# Date 1572006327 14400
# Node ID c23d0ff783d40eccd1e9b9eab8a3b7ef30299a5f
# Parent dcfb23758646c14d07887fdc8d709607ad7acb64
planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit ccd9b839849600b1aa3b6cf54f667575a5f2da9d
diff -r dcfb23758646 -r c23d0ff783d4 dataset_102795.dat
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/dataset_102795.dat Fri Oct 25 08:25:27 2019 -0400
@@ -0,0 +1,32520 @@
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diff -r dcfb23758646 -r c23d0ff783d4 dataset_102795.dat.zip
Binary file dataset_102795.dat.zip has changed
diff -r dcfb23758646 -r c23d0ff783d4 input.h5
Binary file input.h5 has changed
diff -r dcfb23758646 -r c23d0ff783d4 input.h5.zip
Binary file input.h5.zip has changed
diff -r dcfb23758646 -r c23d0ff783d4 scanpy-filter-cells.xml
--- a/scanpy-filter-cells.xml Mon Sep 16 08:19:52 2019 -0400
+++ b/scanpy-filter-cells.xml Fri Oct 25 08:25:27 2019 -0400
@@ -12,15 +12,15 @@
--gene-name '${gene_name}'
#end if
#if $parameters
- #set pars = ' '.join(['--param {name} {min} {max}'.format(**$p) for $p in $parameters])
+ #set pars = ' '.join(['--param c:{name} {min} {max}'.format(**$p) for $p in $parameters])
${pars}
#end if
#if $categories
- #set cats = ' '.join(['--category {name} {values}'.format(**$c) for $c in $categories])
+ #set cats = ' '.join(['--category c:{name} {values}'.format(**$c) for $c in $categories])
${cats}
#end if
#if $subsets
- #set subs = ' '.join(['--subsets {name} {subset}'.format(**$s) for $c in $subsets])
+ #set subs = ' '.join(['--subset c:{name} {subset}'.format(**$s) for $s in $subsets])
${subs}
#end if
@INPUT_OPTS@
@@ -31,14 +31,14 @@
-
+
-
-
+
+
@@ -46,12 +46,12 @@
-
+
-
+
@@ -72,7 +72,7 @@
-
+
diff -r dcfb23758646 -r c23d0ff783d4 scanpy_macros2.xml
--- a/scanpy_macros2.xml Mon Sep 16 08:19:52 2019 -0400
+++ b/scanpy_macros2.xml Fri Oct 25 08:25:27 2019 -0400
@@ -1,9 +1,11 @@
- 1.4.2
+ 1.4.3
More information can be found at https://scanpy.readthedocs.io
=1.4.2).
1.3.2+galaxy1: Normalise-data and filter-genes: Exposes ability to output 10x files.
@@ -31,7 +33,7 @@
- scanpy-scripts
+ scanpy-scripts