# HG changeset patch
# User ebi-gxa
# Date 1574249554 18000
# Node ID 0bba942e086976b2dcc402221618ee1a8d9c1bc9
# Parent  cb55f68ea1d78ae595be98d12c37787674dae5a0
planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit 0a162684a5859a53eefb14af11ba8ec64d42b213-dirty

diff -r cb55f68ea1d7 -r 0bba942e0869 scanpy-filter-genes.xml
--- a/scanpy-filter-genes.xml	Wed Nov 20 05:47:46 2019 -0500
+++ b/scanpy-filter-genes.xml	Wed Nov 20 06:32:34 2019 -0500
@@ -1,5 +1,5 @@
 <?xml version="1.0" encoding="utf-8"?>
-<tool id="scanpy_filter_genes" name="Scanpy FilterGenes" version="@TOOL_VERSION@+galaxy4">
+<tool id="scanpy_filter_genes" name="Scanpy FilterGenes" version="@TOOL_VERSION@+galaxy5">
   <description>based on counts and numbers of cells expressed</description>
   <macros>
     <import>scanpy_macros2.xml</import>
@@ -9,15 +9,15 @@
 ln -s '${input_obj_file}' input.h5 &&
 PYTHONIOENCODING=utf-8 scanpy-filter-genes
 #if $parameters
-    #set pars = ' '.join(['--param g:{name} {min} {max}'.format(**$p) for $p in $parameters])
+    #set pars = ' '.join(["--param 'g:{name}' {min} {max}".format(**$p) for $p in $parameters])
     ${pars}
 #end if
 #if $categories
-    #set cats = ' '.join(["--category g:{name} '{negate}{values}'".format(**$c) for $c in $categories])
+    #set cats = ' '.join(["--category 'g:{name}' '{negate}{values}'".format(**$c) for $c in $categories])
     ${cats}
 #end if
 #if $subsets
-    #set subs = ' '.join(['--subset g:{name} {subset}'.format(**$s) for $s in $subsets])
+    #set subs = ' '.join(["--subset 'g:{name}' '{subset}'".format(**$s) for $s in $subsets])
     ${subs}
 #end if
     @INPUT_OPTS@