# HG changeset patch
# User ebi-gxa
# Date 1591605804 14400
# Node ID 7c4d44c14cebe7702c27deda957d98ba68609b5a
# Parent  645f12f44a6d972e273182da0d0160d35cb76e29
"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit dcb8b19d34c3e2bf822996ca2e80de111c30b27e"

diff -r 645f12f44a6d -r 7c4d44c14ceb scanpy-parameter-iterator.xml
--- a/scanpy-parameter-iterator.xml	Fri Jun 05 09:11:28 2020 -0400
+++ b/scanpy-parameter-iterator.xml	Mon Jun 08 04:43:24 2020 -0400
@@ -1,4 +1,4 @@
-<tool id="scanpy_parameter_iterator" name="Scanpy ParameterIterator" version="0.0.1+galaxy1">
+<tool id="scanpy_parameter_iterator" name="Scanpy ParameterIterator" version="0.0.1+galaxy2">
     <description>produce an iteration over a defined parameter</description>
     <macros>
       <import>scanpy_macros.xml</import>
@@ -20,9 +20,10 @@
 	    ]]></command>
 
     <inputs>
-      <param type="select" name="parameter_name" label="Choose the format of the expression data" help="Use compressed txt, Scanpy or Seurat objects">
+      <param type="select" name="parameter_name" label="Parameter name" help="Select a type of parameter">
         <option value="perplexity" selected="True">Perplexity</option>
         <option value="resolution">Resolution</option>
+        <option value="n_neighbors">Number of neighbors</option>
       </param> 
       <conditional name="input_type">    
         <param type="select" name="parameter_values" label="Choose the format of the input values" help="step increase values or list of all the parameter values">
@@ -66,8 +67,8 @@
 
 **What it does**
 
-Given start, step and end, it will iterate parameters for either perplexity or
-resolution.
+Given start, step and end, it will iterate parameters for either perplexity (for t-SNE), resolution (clustering)
+or number of neighbours (neighbour graph construction).
 
 **Inputs**