1.3.2More information can be found at https://scanpy.readthedocs.io
#if $do_plotting.plot
-P output.png
--projectio $do_plotting.projection
--components $do_plotting.components
#if $do_plotting.color_by
--color-by $do_plotting.color_by
#end if
#if $do_plotting.groups
--group $do_plotting.groups
#end if
#if $do_plotting.use_raw
--use-raw
#end if
#if $do_plotting.palette
--palette $do_plotting.palette
#end if
#if $do_plotting.edges
--edges
#end if
#if $do_plotting.arrows
--arrows
#end if
#if not $do_plotting.sort_order
--no-sort-order
#end if
#if $do_plotting.frameoff
--frameoff
#end if
#end if
scanpy-scripts
${export_mtx}
10.1186/s13059-017-1382-0
@misc{githubscanpy-scripts,
author = {Ni Huang, EBI Gene Expression Team},
year = {2018},
title = {Scanpy-scripts: command line interface for Scanpy},
publisher = {GitHub},
journal = {GitHub repository},
url = {https://github.com/ebi-gene-expression-group/scanpy-scripts},
}export_mtxexport_mtxexport_mtx