comparison scanpy-scale-data.xml @ 5:c23efca79651 draft

planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit 400799f99ee36ad12b990b1ccabf4be16a26c003

4:c8f196ccf34a

<?xml version="1.0" encoding="utf-8"?>
<tool id="scanpy_scale_data" name="Scanpy ScaleData" version="@TOOL_VERSION@+galaxy0">
  <description>to make expression variance the same for all genes</description>
  <macros>
    <import>scanpy_macros2.xml</import>
  </macros>
  <expand macro="requirements"/>

           label="Zero center data before scaling"/>
    <param name="scale_max" argument="--max-value" type="float" min="0" optional="true" label="Truncate to this value after scaling"/>
  </inputs>

  <outputs>
    <data name="output_h5" format="h5" from_work_dir="output.h5" label="${tool.name} on ${on_string}: Scaled data"/>
  </outputs>

  <tests>
    <test>
      <param name="input_obj_file" value="find_variable_genes.h5"/>

5:c23efca79651

<?xml version="1.0" encoding="utf-8"?>
<tool id="scanpy_scale_data" name="Scanpy ScaleData" version="@TOOL_VERSION@+galaxy6">
  <description>to make expression variance the same for all genes</description>
  <macros>
    <import>scanpy_macros2.xml</import>
  </macros>
  <expand macro="requirements"/>

           label="Zero center data before scaling"/>
    <param name="scale_max" argument="--max-value" type="float" min="0" optional="true" label="Truncate to this value after scaling"/>
  </inputs>

  <outputs>
    <expand macro="output_data_obj" description="Scaled data"/>
  </outputs>

  <tests>
    <test>
      <param name="input_obj_file" value="find_variable_genes.h5"/>