Mercurial > repos > ebi-gxa > score_genes_aucell
diff get_test_data.sh @ 2:c700f0381e84 draft
planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 1034a450c97dcbb77871050cf0c6d3da90dac823
author | ebi-gxa |
---|---|
date | Fri, 15 Mar 2024 12:18:05 +0000 |
parents | 1e8697931d73 |
children |
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--- a/get_test_data.sh Thu Nov 16 20:05:21 2023 +0000 +++ b/get_test_data.sh Fri Mar 15 12:18:05 2024 +0000 @@ -19,3 +19,19 @@ mkdir -p test-data pushd test-data get_data $MTX_LINK $BASENAME_FILE + + +# Download input anndata for decoupler-pathway_inference +BASENAME_FILE='pbmc3k_processed.h5ad' + +MTX_LINK='https://zenodo.org/records/3752813/files/pbmc3k_processed.h5ad' + +get_data $MTX_LINK $BASENAME_FILE + +# Download output anndata for decoupler-pathway_inference +BASENAME_FILE='test.h5ad' + +MTX_LINK='https://zenodo.org/records/10401958/files/test.h5ad' + +get_data $MTX_LINK $BASENAME_FILE +