Mercurial > repos > ebi-gxa > scpred_predict_labels
comparison scpred_predict.xml @ 3:1bc003e80986 draft
"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 2f718294665c9d01702ad765904972f463154cd6"
author | ebi-gxa |
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date | Fri, 01 May 2020 10:13:20 -0400 |
parents | 051f5801c819 |
children | fd06ab29487f |
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2:051f5801c819 | 3:1bc003e80986 |
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1 <tool id="scpred_predict_labels" name="Scpred predict" version="@TOOL_VERSION@+galaxy1"> | 1 <tool id="scpred_predict_labels" name="Scpred predict" version="@TOOL_VERSION@+galaxy2"> |
2 <description>Make cell type predictions using trained model.</description> | 2 <description>Make cell type predictions using trained model.</description> |
3 <macros> | 3 <macros> |
4 <import>scpred_macros.xml</import> | 4 <import>scpred_macros.xml</import> |
5 </macros> | 5 </macros> |
6 <expand macro="requirements" /> | 6 <expand macro="requirements" /> |
22 | 22 |
23 ]]></command> | 23 ]]></command> |
24 <inputs> | 24 <inputs> |
25 <param type="data" name="input_object" label="Input SCE object" format="rdata" help="Input SCE object in .rds format" /> | 25 <param type="data" name="input_object" label="Input SCE object" format="rdata" help="Input SCE object in .rds format" /> |
26 <param type="data" name="pred_data" label="Matrix with query data" format="rdata" help="Path to the input prediction matrix in .rds format"/> | 26 <param type="data" name="pred_data" label="Matrix with query data" format="rdata" help="Path to the input prediction matrix in .rds format"/> |
27 <param type="data" name="test_labels" format="txt" label="Test labels" help="Path to the test labels file for evalutation of model performance in text format" /> | 27 <param type="data" name="test_labels" optional="true" format="txt" label="Test labels" help="Path to the test labels file for evalutation of model performance in text format" /> |
28 <param type="text" name="cell_types_column" value="cell_type2" label="Cell types column name" help="Column name of true labels in provided metadata file" /> | 28 <param type="text" name="cell_types_column" value="cell_type2" optional="true" label="Cell types column name" help="Column name of true labels in provided metadata file" /> |
29 </inputs> | 29 </inputs> |
30 <outputs> | 30 <outputs> |
31 <data name="output_tbl_path" format="txt" /> | 31 <data name="output_tbl_path" format="txt" /> |
32 <data name="plot_path" format="txt" /> | 32 <data name="plot_path" format="txt" /> |
33 <data name="confusion_table" format="txt" /> | 33 <data name="confusion_table" format="txt" /> |