Mercurial > repos > ebi-gxa > seurat_scale_data

diff seurat_scale_data.xml @ 4:4147dc085d45 draft

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"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit a1ad1ddd9b8e4db5bb82c3accae8311e0e488b19"
author ebi-gxa
date Fri, 27 Nov 2020 13:49:56 +0000
parents 1a8e93921f01
children d2f6eac0ad42
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line diff
--- a/seurat_scale_data.xml	Sat Jul 11 08:43:24 2020 -0400
+++ b/seurat_scale_data.xml	Fri Nov 27 13:49:56 2020 +0000
@@ -70,8 +70,10 @@
 
     <tests>
         <test>
-            <param name="input" ftype="rdata" value="out_findvar.rds"/>
-            <output name="rds_seurat_file" ftype="rdata" value="out_scale.rds" compare="sim_size"/>
+            <param name="rds_seurat_file" ftype="rdata" value="variable_genes_seurat.rds"/>
+            <param name="vars_to_regress" value="nCount_RNA" />
+            <param name="use_umi" value="True" />
+            <output name="rds_seurat_file" ftype="rdata" value="scaled_seurat.rds" compare="sim_size" delta="1000000000" />
         </test>
     </tests>
     <help><![CDATA[