# HG changeset patch # User ebi-gxa # Date 1586341945 14400 # Node ID 8ee96cde3643da6e77532fb07d83438d71494511 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 4c3dfa7bbd82d702e7e8187c7556f3289804cb49" diff -r 000000000000 -r 8ee96cde3643 garnett_macros.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/garnett_macros.xml Wed Apr 08 06:32:25 2020 -0400 @@ -0,0 +1,44 @@ + + 0.2.8 + More information can be found at https://cole-trapnell-lab.github.io/garnett/docs/ + 18.01 + + + garnett-cli + + + + + /dev/null | grep -v -i "WARNING: ") + ]]> + + + + + + @article{, + url = {https://doi.org/10.1038/s41592-019-0535-3}, + author = {Hannah A. Pliner and Jay Shendure and Cole Trapnell}, + title = {Supervised classification enables rapid annotation of cell atlases}, + journal = {Nature Methods} + } + + + @misc{githubgarnett-cli.git, + author = {Andrey Solovyev, EBI Gene Expression Team}, + year = {2019}, + title = {garnett-cli: command line interface for Garnett tool}, + publisher = {GitHub}, + journal = {GitHub repository}, + url = {https://github.com/ebi-gene-expression-group/garnett-cli.git}, + } + + + + + + diff -r 000000000000 -r 8ee96cde3643 update_marker_file.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/update_marker_file.xml Wed Apr 08 06:32:25 2020 -0400 @@ -0,0 +1,33 @@ + + Update marker file by filtering out suboptimal markers + + garnett_macros.xml + + + + + + + + + + + + + + + + + + + + + + + \ No newline at end of file