Mercurial > repos > ecology > annotations_template

annotate vector_templates.R @ 1:dbba9bedd4bd draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 4b040fe7867d965fb88ce70cc08081367b62b063
author ecology
date Fri, 27 Sep 2024 13:00:18 +0000
parents fab3ca90cb26
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
fab3ca90cb26 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 2d36dc964f548b5acbc43ffd78e51e6fc7dc80bb
ecology
parents:
diff changeset
1 #15/12/2023 #SEGUINEAU Pauline
fab3ca90cb26 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 2d36dc964f548b5acbc43ffd78e51e6fc7dc80bb
ecology
parents:
diff changeset
2
fab3ca90cb26 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 2d36dc964f548b5acbc43ffd78e51e6fc7dc80bb
ecology
parents:
diff changeset
3 #Load packages
fab3ca90cb26 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 2d36dc964f548b5acbc43ffd78e51e6fc7dc80bb
ecology
parents:
diff changeset
4
fab3ca90cb26 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 2d36dc964f548b5acbc43ffd78e51e6fc7dc80bb
ecology
parents:
diff changeset
5 library(EMLassemblyline)
fab3ca90cb26 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 2d36dc964f548b5acbc43ffd78e51e6fc7dc80bb
ecology
parents:
diff changeset
6
fab3ca90cb26 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 2d36dc964f548b5acbc43ffd78e51e6fc7dc80bb
ecology
parents:
diff changeset
7 #Load arguments
fab3ca90cb26 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 2d36dc964f548b5acbc43ffd78e51e6fc7dc80bb
ecology
parents:
diff changeset
8
fab3ca90cb26 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 2d36dc964f548b5acbc43ffd78e51e6fc7dc80bb
ecology
parents:
diff changeset
9 if (length(commandArgs(trailingOnly = TRUE)) > 0) {
fab3ca90cb26 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 2d36dc964f548b5acbc43ffd78e51e6fc7dc80bb
ecology
parents:
diff changeset
10 data_vector <- commandArgs(trailingOnly = TRUE)[1]
fab3ca90cb26 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 2d36dc964f548b5acbc43ffd78e51e6fc7dc80bb
ecology
parents:
diff changeset
11 }
fab3ca90cb26 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 2d36dc964f548b5acbc43ffd78e51e6fc7dc80bb
ecology
parents:
diff changeset
12
fab3ca90cb26 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 2d36dc964f548b5acbc43ffd78e51e6fc7dc80bb
ecology
parents:
diff changeset
13 #Transform arguments
fab3ca90cb26 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 2d36dc964f548b5acbc43ffd78e51e6fc7dc80bb
ecology
parents:
diff changeset
14
fab3ca90cb26 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 2d36dc964f548b5acbc43ffd78e51e6fc7dc80bb
ecology
parents:
diff changeset
15 vector = strsplit(data_vector," ")
fab3ca90cb26 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 2d36dc964f548b5acbc43ffd78e51e6fc7dc80bb
ecology
parents:
diff changeset
16
fab3ca90cb26 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 2d36dc964f548b5acbc43ffd78e51e6fc7dc80bb
ecology
parents:
diff changeset
17 #Make templates to describe data raster
fab3ca90cb26 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 2d36dc964f548b5acbc43ffd78e51e6fc7dc80bb
ecology
parents:
diff changeset
18
fab3ca90cb26 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 2d36dc964f548b5acbc43ffd78e51e6fc7dc80bb
ecology
parents:
diff changeset
19 template_vector_attributes(path = ".",data.path= "data_files", vector.file = vector[[1]])
fab3ca90cb26 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 2d36dc964f548b5acbc43ffd78e51e6fc7dc80bb
ecology
parents:
diff changeset
20 template_categorical_variables(path = ".", data.path = "data_files")
fab3ca90cb26 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 2d36dc964f548b5acbc43ffd78e51e6fc7dc80bb
ecology
parents:
diff changeset
21
fab3ca90cb26 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 2d36dc964f548b5acbc43ffd78e51e6fc7dc80bb
ecology
parents:
diff changeset
22