Mercurial > repos > ecology > argo_getdata
changeset 4:6ed1b9c9d4cb draft default tip
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit 6782334fb04a82760683452a68ac24bd97a3eda2
| author | ecology |
|---|---|
| date | Mon, 09 Mar 2026 12:18:31 +0000 |
| parents | 4b84de936c51 |
| children | |
| files | argo_getdata.xml check.py macro.xml macros.xml |
| diffstat | 4 files changed, 28 insertions(+), 27 deletions(-) [+] |
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--- a/argo_getdata.xml Thu Mar 20 14:49:53 2025 +0000 +++ b/argo_getdata.xml Mon Mar 09 12:18:31 2026 +0000 @@ -1,7 +1,7 @@ <tool id="argo_getdata" name="Argo data access" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="22.05"> <description>for global ocean in situ observing system</description> <macros> - <import>macro.xml</import> + <import>macros.xml</import> </macros> <expand macro="argo_requirements"> </expand>
--- a/check.py Thu Mar 20 14:49:53 2025 +0000 +++ b/check.py Mon Mar 09 12:18:31 2026 +0000 @@ -77,8 +77,9 @@ sys.exit(1) # Append '--force-download' option to the command - if "--force-download" not in command: - command += " --force-download" + # -> depreciated with copernicusmarine V2.0.0 + # if "--force-download" not in command: + # command += " --force-download" # Execute the command try:
--- a/macro.xml Thu Mar 20 14:49:53 2025 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,24 +0,0 @@ -<macros> - <token name="@TOOL_VERSION@">0.1.15</token> - <token name="@VERSION_SUFFIX@">0</token> - <xml name="argo_requirements"> - <requirements> - <requirement type="package" version="@TOOL_VERSION@">argopy</requirement> - <yield/> - </requirements> - </xml> - <xml name="argo_input_user"> - <inputs> - <param name="user" type="select" label="Which kind of user are you ?"> - <option value="standard">🏊 standard mode simplifies the dataset, remove most of its jargon and return a priori good data</option> - <option value="research">🚣 research mode simplifies the dataset to its heart, preserving only data of the highest quality for research studies, including studies sensitive to small pressure and salinity bias </option> - <option value="expert">🏄 expert mode return all the Argo data, without any postprocessing</option> - </param> - </inputs> - </xml> - <xml name="argo_bibref"> - <citations> - <citation type="doi">doi:10.21105/joss.02425</citation> - </citations> - </xml> -</macros>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/macros.xml Mon Mar 09 12:18:31 2026 +0000 @@ -0,0 +1,24 @@ +<macros> + <token name="@TOOL_VERSION@">0.1.15</token> + <token name="@VERSION_SUFFIX@">0</token> + <xml name="argo_requirements"> + <requirements> + <requirement type="package" version="@TOOL_VERSION@">argopy</requirement> + <yield/> + </requirements> + </xml> + <xml name="argo_input_user"> + <inputs> + <param name="user" type="select" label="Which kind of user are you ?"> + <option value="standard">🏊 standard mode simplifies the dataset, remove most of its jargon and return a priori good data</option> + <option value="research">🚣 research mode simplifies the dataset to its heart, preserving only data of the highest quality for research studies, including studies sensitive to small pressure and salinity bias </option> + <option value="expert">🏄 expert mode return all the Argo data, without any postprocessing</option> + </param> + </inputs> + </xml> + <xml name="argo_bibref"> + <citations> + <citation type="doi">doi:10.21105/joss.02425</citation> + </citations> + </xml> +</macros>