Mercurial > repos > ecology > cb_dissim
annotate loop_col_scale.r @ 0:7e6cc3da1189 draft
planemo upload for repository https://github.com/Marie59/champ_blocs commit 8b6fcddd239979c11977472de6cbb349690758c8
author | ecology |
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date | Fri, 02 Dec 2022 16:13:18 +0000 |
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rev | line source |
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0
7e6cc3da1189
planemo upload for repository https://github.com/Marie59/champ_blocs commit 8b6fcddd239979c11977472de6cbb349690758c8
ecology
parents:
diff
changeset
|
1 library("rmarkdown") |
7e6cc3da1189
planemo upload for repository https://github.com/Marie59/champ_blocs commit 8b6fcddd239979c11977472de6cbb349690758c8
ecology
parents:
diff
changeset
|
2 |
7e6cc3da1189
planemo upload for repository https://github.com/Marie59/champ_blocs commit 8b6fcddd239979c11977472de6cbb349690758c8
ecology
parents:
diff
changeset
|
3 df <- indic |
7e6cc3da1189
planemo upload for repository https://github.com/Marie59/champ_blocs commit 8b6fcddd239979c11977472de6cbb349690758c8
ecology
parents:
diff
changeset
|
4 df_full <- indic_full |
7e6cc3da1189
planemo upload for repository https://github.com/Marie59/champ_blocs commit 8b6fcddd239979c11977472de6cbb349690758c8
ecology
parents:
diff
changeset
|
5 dir.create("results") |
7e6cc3da1189
planemo upload for repository https://github.com/Marie59/champ_blocs commit 8b6fcddd239979c11977472de6cbb349690758c8
ecology
parents:
diff
changeset
|
6 slices <- unique(df$Site)[!is.na(unique(df$Site))] |
7e6cc3da1189
planemo upload for repository https://github.com/Marie59/champ_blocs commit 8b6fcddd239979c11977472de6cbb349690758c8
ecology
parents:
diff
changeset
|
7 |
7e6cc3da1189
planemo upload for repository https://github.com/Marie59/champ_blocs commit 8b6fcddd239979c11977472de6cbb349690758c8
ecology
parents:
diff
changeset
|
8 for (v in slices) { |
7e6cc3da1189
planemo upload for repository https://github.com/Marie59/champ_blocs commit 8b6fcddd239979c11977472de6cbb349690758c8
ecology
parents:
diff
changeset
|
9 rmarkdown::render(report, |
7e6cc3da1189
planemo upload for repository https://github.com/Marie59/champ_blocs commit 8b6fcddd239979c11977472de6cbb349690758c8
ecology
parents:
diff
changeset
|
10 output_file = paste0(v, ".docx"), |
7e6cc3da1189
planemo upload for repository https://github.com/Marie59/champ_blocs commit 8b6fcddd239979c11977472de6cbb349690758c8
ecology
parents:
diff
changeset
|
11 output_dir = file.path("results"), |
7e6cc3da1189
planemo upload for repository https://github.com/Marie59/champ_blocs commit 8b6fcddd239979c11977472de6cbb349690758c8
ecology
parents:
diff
changeset
|
12 params = list(Site = v) |
7e6cc3da1189
planemo upload for repository https://github.com/Marie59/champ_blocs commit 8b6fcddd239979c11977472de6cbb349690758c8
ecology
parents:
diff
changeset
|
13 ) |
7e6cc3da1189
planemo upload for repository https://github.com/Marie59/champ_blocs commit 8b6fcddd239979c11977472de6cbb349690758c8
ecology
parents:
diff
changeset
|
14 } |