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comparison cb_dissimilarity.xml @ 1:ffaa9a71b2d2 draft

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planemo upload for repository https://github.com/Marie59/champ_blocs commit 0d86db7d42b608c386a54500064f5f9c9d7019a4
author ecology
date Wed, 04 Jan 2023 13:21:53 +0000
parents 7e6cc3da1189
children 8dc082da41c1
comparison
equal deleted inserted replaced
0:7e6cc3da1189 1:ffaa9a71b2d2
1 <tool id="cb_dissim" name="Dissimilarity" version="@VERSION@" profile = "20.01"> 1 <tool id="cb_dissim" name="QECB-Dissimilarity" version="@VERSION@" profile = "20.01">
2 <description>indicator</description> 2 <description>indicator</description>
3 <macros> 3 <macros>
4 <import>macro.xml</import> 4 <import>macro.xml</import>
5 </macros> 5 </macros>
6 <expand macro="cb_requirements"> 6 <expand macro="cb_requirements">
7 <requirement type="package" version="2.16">r-rmarkdown</requirement> 7 <requirement type="package" version="2.19">r-rmarkdown</requirement>
8 <requirement type="package" version="0.2.4">r-officedown</requirement> 8 <requirement type="package" version="0.2.4">r-officedown</requirement>
9 <requirement type="package" version="2.6_2">r-vegan</requirement> 9 <requirement type="package" version="2.6_4">r-vegan</requirement>
10 <requirement type="package" version="1.3.2">r-tidyverse</requirement> 10 <requirement type="package" version="1.3.2">r-tidyverse</requirement>
11 <requirement type="package" version="3.3.6">r-ggplot2</requirement> 11 <requirement type="package" version="3.4">r-ggplot2</requirement>
12 </expand> 12 </expand>
13 <required_files> 13 <required_files>
14 <include type="literal" path="test-data/champbloc_qecb.csv"/> 14 <include type="literal" path="test-data/champbloc_qecb.csv"/>
15 <include type="literal" path="test-data/ficheterrain.csv"/> 15 <include type="literal" path="test-data/ficheterrain.csv"/>
16 <include type="literal" path="cb_dissimilarity.r"/> 16 <include type="literal" path="cb_dissimilarity.r"/>
38 <option value="Y">Yes</option> 38 <option value="Y">Yes</option>
39 </param> 39 </param>
40 <param name="choice_date" type="integer" value="2021" label="Until when do you have data (write only the YEAR) ?" help="Example write : 2021 "/> 40 <param name="choice_date" type="integer" value="2021" label="Until when do you have data (write only the YEAR) ?" help="Example write : 2021 "/>
41 </inputs> 41 </inputs>
42 <outputs> 42 <outputs>
43 <data name="output_qecb" from_work_dir="qecbnato0.RDS" format="Rdata" label="Clean Rdata"/> 43 <data name="output_qecb" from_work_dir="qecbnato0.RDS" format="rdata" label="Clean Rdata"/>
44 <data name="output_eco" from_work_dir="bret_egmp_basq_qecb.RDS" format="Rdata" label="Bret Rdata"/> 44 <data name="output_eco" from_work_dir="bret_egmp_basq_qecb.RDS" format="rdata" label="Bret Rdata"/>
45 <data name="output_matri" from_work_dir="matri_full.RDS" format="Rdata" label="Matrice full Rdata"/> 45 <data name="output_matri" from_work_dir="matri_full.RDS" format="rdata" label="Matrice full Rdata"/>
46 <collection type="list" name="plots_bf" label="Bloc fixe et bloc mobile face sup plot"> 46 <collection type="list" name="plots_bf" label="Bloc fixe et bloc mobile face sup plot">
47 <discover_datasets pattern="bm(?P&lt;designation&gt;.+)\.png" visible="false" format="png"/> 47 <discover_datasets pattern="bm(?P&lt;designation&gt;.+)\.png" visible="false" format="png"/>
48 </collection> 48 </collection>
49 <collection type="list" name="plots_bm" label="Bloc mobile face sup et face inf plot"> 49 <collection type="list" name="plots_bm" label="Bloc mobile face sup et face inf plot">
50 <discover_datasets pattern="fs(?P&lt;designation&gt;.+)\.png" visible="false" format="png"/> 50 <discover_datasets pattern="fs(?P&lt;designation&gt;.+)\.png" visible="false" format="png"/>