Mercurial > repos > ecology > cb_div
comparison div_index.xml @ 1:5b31641e6d30 draft default tip
planemo upload for repository https://github.com/Marie59/champ_blocs commit 075fd90d1a39ae7912b48549e5537971635b9620
author | ecology |
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date | Sat, 18 Mar 2023 16:49:37 +0000 |
parents | abc8da8c12ba |
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0:abc8da8c12ba | 1:5b31641e6d30 |
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1 <tool id="cb_div" name="Diversity" version="@VERSION@" profile = "20.01"> | 1 <tool id="cb_div" name="Diversity" version="@VERSION@" profile = "20.01"> |
2 <description>indicators</description> | 2 <description>indicators</description> |
3 <macros> | 3 <macros> |
4 <import>macro.xml</import> | 4 <import>macro.xml</import> |
5 </macros> | 5 </macros> |
6 <expand macro="cb_requirements"> | 6 <requirements> |
7 <requirement type="package" version="1.3.2">r-tidyverse</requirement> | |
8 <requirement type="package" version="1.7_20">r-ade4</requirement> | |
9 <requirement type="package" version="2.2">r-adiv</requirement> | 7 <requirement type="package" version="2.2">r-adiv</requirement> |
10 <requirement type="package" version="3.4.0">r-ggplot2</requirement> | 8 <requirement type="package" version="1.0.10">r-dplyr</requirement> |
11 </expand> | 9 <requirement type="package" version="1.2.1">r-tidyr</requirement> |
10 <requirement type="package" version="3.1.8">r-tibble</requirement> | |
11 <requirement type="package" version="1.0.1">r-rgl</requirement> | |
12 </requirements> | |
12 <required_files> | 13 <required_files> |
13 <include type="literal" path="div_index.r"/> | 14 <include type="literal" path="div_index.r"/> |
14 </required_files> | 15 </required_files> |
15 <command detect_errors="exit_code"><![CDATA[ | 16 <command detect_errors="exit_code"><![CDATA[ |
16 Rscript | 17 Rscript |
20 '$output_rdata' | 21 '$output_rdata' |
21 '$plots' | 22 '$plots' |
22 ]]> | 23 ]]> |
23 </command> | 24 </command> |
24 <inputs> | 25 <inputs> |
25 <param name="input_data" type="data" format="rdata" label="Input Clean data"/> | 26 <param name="input_data" type="data" format="rdata" label="Input clean data"/> |
26 </inputs> | 27 </inputs> |
27 <outputs> | 28 <outputs> |
28 <data name="output_div" from_work_dir="Valeurs_stat.tabular" format="tabular" label="Diversity index"/> | 29 <data name="output_div" from_work_dir="Valeurs_stat.tabular" format="tabular" label="Diversity index"/> |
29 <data name="output_rdata" from_work_dir="div_df.RDS" format="rdata" label="Diversity Rdata"/> | 30 <data name="output_rdata" from_work_dir="div_df.RDS" format="rdata" label="Diversity Rdata"/> |
30 <collection type="list" name="plots" label="Diversity plot"> | 31 <collection type="list" name="plots" label="Diversity plot"> |