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comparison div_index.xml @ 1:5b31641e6d30 draft default tip

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planemo upload for repository https://github.com/Marie59/champ_blocs commit 075fd90d1a39ae7912b48549e5537971635b9620
author ecology
date Sat, 18 Mar 2023 16:49:37 +0000
parents abc8da8c12ba
children
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0:abc8da8c12ba 1:5b31641e6d30
1 <tool id="cb_div" name="Diversity" version="@VERSION@" profile = "20.01"> 1 <tool id="cb_div" name="Diversity" version="@VERSION@" profile = "20.01">
2 <description>indicators</description> 2 <description>indicators</description>
3 <macros> 3 <macros>
4 <import>macro.xml</import> 4 <import>macro.xml</import>
5 </macros> 5 </macros>
6 <expand macro="cb_requirements"> 6 <requirements>
7 <requirement type="package" version="1.3.2">r-tidyverse</requirement>
8 <requirement type="package" version="1.7_20">r-ade4</requirement>
9 <requirement type="package" version="2.2">r-adiv</requirement> 7 <requirement type="package" version="2.2">r-adiv</requirement>
10 <requirement type="package" version="3.4.0">r-ggplot2</requirement> 8 <requirement type="package" version="1.0.10">r-dplyr</requirement>
11 </expand> 9 <requirement type="package" version="1.2.1">r-tidyr</requirement>
10 <requirement type="package" version="3.1.8">r-tibble</requirement>
11 <requirement type="package" version="1.0.1">r-rgl</requirement>
12 </requirements>
12 <required_files> 13 <required_files>
13 <include type="literal" path="div_index.r"/> 14 <include type="literal" path="div_index.r"/>
14 </required_files> 15 </required_files>
15 <command detect_errors="exit_code"><![CDATA[ 16 <command detect_errors="exit_code"><![CDATA[
16 Rscript 17 Rscript
20 '$output_rdata' 21 '$output_rdata'
21 '$plots' 22 '$plots'
22 ]]> 23 ]]>
23 </command> 24 </command>
24 <inputs> 25 <inputs>
25 <param name="input_data" type="data" format="rdata" label="Input Clean data"/> 26 <param name="input_data" type="data" format="rdata" label="Input clean data"/>
26 </inputs> 27 </inputs>
27 <outputs> 28 <outputs>
28 <data name="output_div" from_work_dir="Valeurs_stat.tabular" format="tabular" label="Diversity index"/> 29 <data name="output_div" from_work_dir="Valeurs_stat.tabular" format="tabular" label="Diversity index"/>
29 <data name="output_rdata" from_work_dir="div_df.RDS" format="rdata" label="Diversity Rdata"/> 30 <data name="output_rdata" from_work_dir="div_df.RDS" format="rdata" label="Diversity Rdata"/>
30 <collection type="list" name="plots" label="Diversity plot"> 31 <collection type="list" name="plots" label="Diversity plot">