comparison copernicusmarine.xml @ 2:c07f11d8e49a draft default tip

planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit fa49586ecc02936c00015c4368a3b5699295203c

1:4edd010161e9

<tool id="copernicusmarine" name="Copernicus Marine Data Store" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="22.01" license="MIT">
    <description>retrieve marine data</description>
    <macros>
        <token name="@TOOL_VERSION@">1.3.3</token>
        <token name="@VERSION_SUFFIX@">0</token>
    </macros>
    <requirements>
        <requirement type="package" version="@TOOL_VERSION@">copernicusmarine</requirement>
    </requirements>
    <command detect_errors="exit_code"><![CDATA[
    #import re
        #set $cmems_username = $__user__.extra_preferences.get('cmems_username', "")
        #set $cmems_password = $__user__.extra_preferences.get('cmems_password', "")

        #if $cmems_username == "" or $cmems_password == ""
            #set $cmems_username = os.getenv('CMEMS_USERNAME', '')
            #set $cmems_password = os.getenv('CMEMS_PASSWORD', '')

============================
Copernicus Marine Data Store
============================

** Context **
This tool is a wrapper to retrieve data from the Copernicus Marine Environment Monitoring Service (CMEMS).

- It allows to retrieve data from the Copernicus Marine Service.
- Any user willing to use this tool needs to `create a new account <https://data.marine.copernicus.eu/login>`_.
- Set your Copernicus CMEMS API Key via: User > Preferences > Manage Information

- Back on Galaxy paste it in the input field "Paste API Request".

For more information on the Command-Line Interface (CLI) go on `Copernicus Marine Toolbox CLI - Subset <https://help.marine.copernicus.eu/en/articles/7972861-copernicus-marine-toolbox-cli-subset>`

** Input **
Command line from the Copernicus marine services copy paste as a text.

** Output **
A netcdf file containing the the data chose by the user from the Copernicus Marine Data Store.

    ]]></help>
    <citations>
        <citation type="bibtex"> 

2:c07f11d8e49a

<tool id="copernicusmarine" name="Copernicus Marine Data Store" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="22.01" license="MIT">
    <description>retrieve marine data</description>
    <macros>
        <token name="@TOOL_VERSION@">1.3.3</token>
        <token name="@VERSION_SUFFIX@">1</token>
    </macros>
    <requirements>
        <requirement type="package" version="@TOOL_VERSION@">copernicusmarine</requirement>
    </requirements>
    <command detect_errors="exit_code"><![CDATA[
    #import re
        #set $cmems_username = $__user__.extra_preferences.get('cmems_account|cmems_username', "")
        #set $cmems_password = $__user__.extra_preferences.get('cmems_account|cmems_password', "")

        #if $cmems_username == "" or $cmems_password == ""
            #set $cmems_username = os.getenv('CMEMS_USERNAME', '')
            #set $cmems_password = os.getenv('CMEMS_PASSWORD', '')

============================
Copernicus Marine Data Store
============================

** Context **
        
This tool is a wrapper to retrieve data from the Copernicus Marine Environment Monitoring Service (CMEMS).

- It allows to retrieve data from the Copernicus Marine Service.
- Any user willing to use this tool needs to `create a new account <https://data.marine.copernicus.eu/login>`_.
- Set your Copernicus CMEMS API Key via: User > Preferences > Manage Information

- Back on Galaxy paste it in the input field "Paste API Request".

For more information on the Command-Line Interface (CLI) go on `Copernicus Marine Toolbox CLI - Subset <https://help.marine.copernicus.eu/en/articles/7972861-copernicus-marine-toolbox-cli-subset>`

** Input **
        
Command line from the Copernicus marine services copy paste as a text.

** Output **
        
A netcdf file containing the the data chose by the user from the Copernicus Marine Data Store.

    ]]></help>
    <citations>
        <citation type="bibtex">