Mercurial > repos > ecology > copernicusmarine

changeset 2:c07f11d8e49a draft default tip

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planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean commit fa49586ecc02936c00015c4368a3b5699295203c
author ecology
date Mon, 18 Nov 2024 10:39:18 +0000
parents 4edd010161e9
children
files copernicusmarine.xml
diffstat 1 files changed, 6 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/copernicusmarine.xml	Wed Oct 30 10:51:15 2024 +0000
+++ b/copernicusmarine.xml	Mon Nov 18 10:39:18 2024 +0000
@@ -2,15 +2,15 @@
     <description>retrieve marine data</description>
     <macros>
         <token name="@TOOL_VERSION@">1.3.3</token>
-        <token name="@VERSION_SUFFIX@">0</token>
+        <token name="@VERSION_SUFFIX@">1</token>
     </macros>
     <requirements>
         <requirement type="package" version="@TOOL_VERSION@">copernicusmarine</requirement>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
     #import re
-        #set $cmems_username = $__user__.extra_preferences.get('cmems_username', "")
-        #set $cmems_password = $__user__.extra_preferences.get('cmems_password', "")
+        #set $cmems_username = $__user__.extra_preferences.get('cmems_account|cmems_username', "")
+        #set $cmems_password = $__user__.extra_preferences.get('cmems_account|cmems_password', "")
 
         #if $cmems_username == "" or $cmems_password == ""
             #set $cmems_username = os.getenv('CMEMS_USERNAME', '')
@@ -77,6 +77,7 @@
 ============================
 
 ** Context **
+        
 This tool is a wrapper to retrieve data from the Copernicus Marine Environment Monitoring Service (CMEMS).
 
 - It allows to retrieve data from the Copernicus Marine Service.
@@ -95,9 +96,11 @@
 For more information on the Command-Line Interface (CLI) go on `Copernicus Marine Toolbox CLI - Subset <https://help.marine.copernicus.eu/en/articles/7972861-copernicus-marine-toolbox-cli-subset>`
 
 ** Input **
+        
 Command line from the Copernicus marine services copy paste as a text.
 
 ** Output **
+        
 A netcdf file containing the the data chose by the user from the Copernicus Marine Data Store.
 
     ]]></help>