annotate eal_templates.xml @ 0:d4f168043757 draft

planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 5c327a780dc58fb954e7b65db6fd413ee3909c84
author ecology
date Mon, 04 Dec 2023 21:48:55 +0000
parents
children 3b0fa963ae3e
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
d4f168043757 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 5c327a780dc58fb954e7b65db6fd413ee3909c84
ecology
parents:
diff changeset
1 <tool id="eal_templates" name="Make templates" version="0.1.0+galaxy0" profile="22.05">
d4f168043757 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 5c327a780dc58fb954e7b65db6fd413ee3909c84
ecology
parents:
diff changeset
2 <description>for core features of a data package for EML metadata creation</description>
d4f168043757 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 5c327a780dc58fb954e7b65db6fd413ee3909c84
ecology
parents:
diff changeset
3 <requirements>
d4f168043757 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 5c327a780dc58fb954e7b65db6fd413ee3909c84
ecology
parents:
diff changeset
4 <requirement type="package" version="4.3.1">r-base</requirement>
d4f168043757 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 5c327a780dc58fb954e7b65db6fd413ee3909c84
ecology
parents:
diff changeset
5 <requirement type="package" version="3.5.5">r-emlassemblyline</requirement>
d4f168043757 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 5c327a780dc58fb954e7b65db6fd413ee3909c84
ecology
parents:
diff changeset
6 </requirements>
d4f168043757 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 5c327a780dc58fb954e7b65db6fd413ee3909c84
ecology
parents:
diff changeset
7 <command detect_errors="exit_code"><![CDATA[
d4f168043757 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 5c327a780dc58fb954e7b65db6fd413ee3909c84
ecology
parents:
diff changeset
8
d4f168043757 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 5c327a780dc58fb954e7b65db6fd413ee3909c84
ecology
parents:
diff changeset
9 Rscript
d4f168043757 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 5c327a780dc58fb954e7b65db6fd413ee3909c84
ecology
parents:
diff changeset
10 '$__tool_directory__/eal_templates.R'
d4f168043757 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 5c327a780dc58fb954e7b65db6fd413ee3909c84
ecology
parents:
diff changeset
11 '$license'
d4f168043757 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 5c327a780dc58fb954e7b65db6fd413ee3909c84
ecology
parents:
diff changeset
12 '$file_type'
d4f168043757 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 5c327a780dc58fb954e7b65db6fd413ee3909c84
ecology
parents:
diff changeset
13
d4f168043757 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 5c327a780dc58fb954e7b65db6fd413ee3909c84
ecology
parents:
diff changeset
14 ]]></command>
d4f168043757 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 5c327a780dc58fb954e7b65db6fd413ee3909c84
ecology
parents:
diff changeset
15 <inputs>
d4f168043757 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 5c327a780dc58fb954e7b65db6fd413ee3909c84
ecology
parents:
diff changeset
16 <param name="license" type="select" label="Under what license are your data?">
d4f168043757 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 5c327a780dc58fb954e7b65db6fd413ee3909c84
ecology
parents:
diff changeset
17 <option value="CC0">CC0</option>
d4f168043757 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 5c327a780dc58fb954e7b65db6fd413ee3909c84
ecology
parents:
diff changeset
18 <option value="CCBY">CCBY</option>
d4f168043757 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 5c327a780dc58fb954e7b65db6fd413ee3909c84
ecology
parents:
diff changeset
19 </param>
d4f168043757 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 5c327a780dc58fb954e7b65db6fd413ee3909c84
ecology
parents:
diff changeset
20 <param name="file_type" type="select" label="What type of file do you want for templates?">
d4f168043757 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 5c327a780dc58fb954e7b65db6fd413ee3909c84
ecology
parents:
diff changeset
21 <option value=".txt">Text</option>
d4f168043757 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 5c327a780dc58fb954e7b65db6fd413ee3909c84
ecology
parents:
diff changeset
22 <option value=".docx">MS Word</option>
d4f168043757 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 5c327a780dc58fb954e7b65db6fd413ee3909c84
ecology
parents:
diff changeset
23 <option value=".md">Markdown</option>
d4f168043757 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 5c327a780dc58fb954e7b65db6fd413ee3909c84
ecology
parents:
diff changeset
24 </param>
d4f168043757 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 5c327a780dc58fb954e7b65db6fd413ee3909c84
ecology
parents:
diff changeset
25
d4f168043757 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 5c327a780dc58fb954e7b65db6fd413ee3909c84
ecology
parents:
diff changeset
26 </inputs>
d4f168043757 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 5c327a780dc58fb954e7b65db6fd413ee3909c84
ecology
parents:
diff changeset
27 <outputs>
d4f168043757 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 5c327a780dc58fb954e7b65db6fd413ee3909c84
ecology
parents:
diff changeset
28 <collection name="output" type="list" label="Templates">
d4f168043757 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 5c327a780dc58fb954e7b65db6fd413ee3909c84
ecology
parents:
diff changeset
29 <discover_datasets pattern="__name_and_ext__"/>
d4f168043757 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 5c327a780dc58fb954e7b65db6fd413ee3909c84
ecology
parents:
diff changeset
30 </collection>
d4f168043757 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 5c327a780dc58fb954e7b65db6fd413ee3909c84
ecology
parents:
diff changeset
31 </outputs>
d4f168043757 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 5c327a780dc58fb954e7b65db6fd413ee3909c84
ecology
parents:
diff changeset
32 <tests>
d4f168043757 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 5c327a780dc58fb954e7b65db6fd413ee3909c84
ecology
parents:
diff changeset
33 <test>
d4f168043757 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 5c327a780dc58fb954e7b65db6fd413ee3909c84
ecology
parents:
diff changeset
34 <param name="license" value="CCBY"/>
d4f168043757 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 5c327a780dc58fb954e7b65db6fd413ee3909c84
ecology
parents:
diff changeset
35 <param name="file_type" value=".txt"/>
d4f168043757 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 5c327a780dc58fb954e7b65db6fd413ee3909c84
ecology
parents:
diff changeset
36 <output_collection name='output' type = "list" count="6"/>
d4f168043757 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 5c327a780dc58fb954e7b65db6fd413ee3909c84
ecology
parents:
diff changeset
37 </test>
d4f168043757 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 5c327a780dc58fb954e7b65db6fd413ee3909c84
ecology
parents:
diff changeset
38 </tests>
d4f168043757 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 5c327a780dc58fb954e7b65db6fd413ee3909c84
ecology
parents:
diff changeset
39 <help><![CDATA[
d4f168043757 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 5c327a780dc58fb954e7b65db6fd413ee3909c84
ecology
parents:
diff changeset
40
d4f168043757 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 5c327a780dc58fb954e7b65db6fd413ee3909c84
ecology
parents:
diff changeset
41 **What it does?**
d4f168043757 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 5c327a780dc58fb954e7b65db6fd413ee3909c84
ecology
parents:
diff changeset
42 --------------------
d4f168043757 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 5c327a780dc58fb954e7b65db6fd413ee3909c84
ecology
parents:
diff changeset
43
d4f168043757 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 5c327a780dc58fb954e7b65db6fd413ee3909c84
ecology
parents:
diff changeset
44 This tool produce templates for core features of a data package for EML metadata.
d4f168043757 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 5c327a780dc58fb954e7b65db6fd413ee3909c84
ecology
parents:
diff changeset
45 This tool can be used before of the make eml tool.
d4f168043757 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 5c327a780dc58fb954e7b65db6fd413ee3909c84
ecology
parents:
diff changeset
46
d4f168043757 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 5c327a780dc58fb954e7b65db6fd413ee3909c84
ecology
parents:
diff changeset
47 **How to use it?**
d4f168043757 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 5c327a780dc58fb954e7b65db6fd413ee3909c84
ecology
parents:
diff changeset
48 --------------------
d4f168043757 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 5c327a780dc58fb954e7b65db6fd413ee3909c84
ecology
parents:
diff changeset
49 To use this tool, you need to select what type of license are your data under. Then you need to select the type of file you want for your templates.
d4f168043757 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 5c327a780dc58fb954e7b65db6fd413ee3909c84
ecology
parents:
diff changeset
50
d4f168043757 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 5c327a780dc58fb954e7b65db6fd413ee3909c84
ecology
parents:
diff changeset
51 ]]></help>
d4f168043757 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 5c327a780dc58fb954e7b65db6fd413ee3909c84
ecology
parents:
diff changeset
52 </tool>