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comparison eal_templates.xml @ 1:3b0fa963ae3e draft

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planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit f00c48e2a16ba6154e6c1aa50330586eefb13a32
author ecology
date Sat, 23 Dec 2023 20:41:26 +0000
parents d4f168043757
children 67b2cd9c2954
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0:d4f168043757 1:3b0fa963ae3e
1 <tool id="eal_templates" name="Make templates" version="0.1.0+galaxy0" profile="22.05"> 1 <tool id="eal_templates" name="Make templates" version="0.1.1+galaxy0" profile="22.05">
2 <description>for core features of a data package for EML metadata creation</description> 2 <description>for core features of a data package for EML metadata creation</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="4.3.1">r-base</requirement> 4 <container type="docker">outils-patrinat.mnhn.fr/metashark:latest</container>
5 <requirement type="package" version="3.5.5">r-emlassemblyline</requirement>
6 </requirements> 5 </requirements>
7 <command detect_errors="exit_code"><![CDATA[ 6 <command detect_errors="exit_code"><![CDATA[
8 7
9 Rscript 8 Rscript
10 '$__tool_directory__/eal_templates.R' 9 '$__tool_directory__/eal_templates.R'
23 <option value=".md">Markdown</option> 22 <option value=".md">Markdown</option>
24 </param> 23 </param>
25 24
26 </inputs> 25 </inputs>
27 <outputs> 26 <outputs>
28 <collection name="output" type="list" label="Templates"> 27 <collection name="output" type="list" label="Core features templates">
29 <discover_datasets pattern="__name_and_ext__"/> 28 <discover_datasets pattern="(?P&lt;designation&gt;.+\.txt)" format="txt"/>
29 <discover_datasets pattern="(?P&lt;designation&gt;.+\.docx)" format="docx"/>
30 <discover_datasets pattern="(?P&lt;designation&gt;.+\.md)" format="markdown"/>
30 </collection> 31 </collection>
31 </outputs> 32 </outputs>
32 <tests> 33 <tests>
33 <test> 34 <test>
34 <param name="license" value="CCBY"/> 35 <param name="license" value="CCBY"/>
38 </tests> 39 </tests>
39 <help><![CDATA[ 40 <help><![CDATA[
40 41
41 **What it does?** 42 **What it does?**
42 -------------------- 43 --------------------
44 This tool produce templates for core features of a data package used to build EML metadata. It produces the following eal files:
43 45
44 This tool produce templates for core features of a data package for EML metadata. 46 - abstract.txt
45 This tool can be used before of the make eml tool. 47 - keywords.txt
48 - methods.txt
49 - personnel.txt
50 - intellectual_rights.txt
51 - additional_info.txt
52
53 After that, these files can be edited to add informations about your data and then be used in the make EML tool to produce EML metadata.
46 54
47 **How to use it?** 55 **How to use it?**
48 -------------------- 56 --------------------
49 To use this tool, you need to select what type of license are your data under. Then you need to select the type of file you want for your templates. 57 To use this tool, you need to select what type of license are your data under. Then you need to select the type of file you want for your templates.
50 58