comparison cluster_ceamarc.R @ 1:fc621f3f8226 draft

planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 459ba1277acd7d8d4a02f90dbd7ff444bf8eac92

0:f0d6938d0451

    metric <- args[5]
    sample <- as.numeric(args[6])
}

#load data 
env.data <- read.table(enviro, header=TRUE, sep=" ",dec = ".", na.strings = "-9999.00")
data.bio <- read.table(data.bio, header=TRUE, sep="\t")
test3 <- read.table(data, header = TRUE, sep="\t") 

######################################################################################################
#Make clustering

clus <- cbind(data.bio[1:nrow(test3), 1:2],test5$clustering)
names(clus) <- c("lat", "long", "cluster")
clus <- cbind(clus,test3,env.data[,3:19])

write.table(clus[1:3], file = "points_clus.txt",quote = FALSE, row.names = FALSE)
write.table(clus, file = "clus.txt",quote = FALSE, row.names = FALSE)

1:fc621f3f8226

    metric <- args[5]
    sample <- as.numeric(args[6])
}

#load data 
env.data <- read.table(enviro, header=TRUE, sep="\t",dec = ".", na.strings = "-9999")
data.bio <- read.table(data.bio, header=TRUE, sep="\t")
test3 <- read.table(data, header = TRUE, sep="\t") 

######################################################################################################
#Make clustering

clus <- cbind(data.bio[1:nrow(test3), 1:2],test5$clustering)
names(clus) <- c("lat", "long", "cluster")
clus <- cbind(clus,test3,env.data[,3:19])

write.table(clus[1:3], file = "points_clus.tsv", quote = FALSE, sep="\t", row.names = FALSE)
write.table(clus, file = "clus.tsv", quote = FALSE, sep="\t", row.names = FALSE)