Mercurial > repos > ecology > ecoregion_brt_analysis

changeset 7:694738eda0dc draft default tip

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planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit ced658540f05bb07e1e687af30a3fa4ea8e4803c
author ecology
date Wed, 28 May 2025 10:12:30 +0000
parents aba980404954
children
files BRT_model.xml brt.R
diffstat 2 files changed, 8 insertions(+), 10 deletions(-) [+]
line wrap: on
line diff
--- a/BRT_model.xml	Wed May 14 13:49:25 2025 +0000
+++ b/BRT_model.xml	Wed May 28 10:12:30 2025 +0000
@@ -1,4 +1,4 @@
-<tool id="ecoregion_brt_analysis" name="BRT tool prediction" version="0.1.0+galaxy0" profile="22.05">
+<tool id="ecoregion_brt_analysis" name="BRT tool prediction" version="0.1.2+galaxy0" profile="23.2">
     <description>for species distribution modelling</description>
     <requirements>
        <requirement type="package" version="4.3.3">r-base</requirement>
@@ -22,13 +22,13 @@
     <inputs>
       <param name="enviro" type="data" format="tabular" label="Input your environment data file of your study area (tabular format only)" help="See example below"/>
       <param name="dec_env" type="select" label="What's the decimal separator of your environement data file ?">
-              <option value=".">Dot</option>
-              <option value=",">Comma</option>
+              <option value="Dot">Dot</option>
+              <option value="Comma">Comma</option>
       </param>
       <param type="data" name="species_files" label="Input your occurrences data file(s) containing also the environemental caracteristics where the species has been observe (tabular format only)" format="tabular" multiple="True" help="See example below"/>
-      <param name="dec_species" type="select" label="What's the decimal separator of your occurrences data file(s) ?" help="It must be the same for all your occurences data files" >
-              <option value=".">Dot</option>
-              <option value=",">Comma</option>
+      <param name="dec_species" type="select" label="What's the decimal separator of your occurrences data file(s) ?" help="It must be the same for all your occurences data files">
+              <option value="Dot">Dot</option>
+              <option value="Comma">Comma</option>
       </param>
       <param name="abioticname" type="data_column" label="Choose column(s) where your abiotic parameter are in your environment data file." data_ref="enviro" multiple="true" use_header_names="true"/>
     </inputs>
@@ -112,5 +112,3 @@
        <citation type="doi">10.32614/CRAN.package.ggplot2</citation>
     </citations>
 </tool>
-
-
--- a/brt.R	Wed May 14 13:49:25 2025 +0000
+++ b/brt.R	Wed May 28 10:12:30 2025 +0000
@@ -21,8 +21,8 @@
     enviro <- args[1]
     species_files <- args[2]
     abio_para <- args[3]
-    dec_env <- args[8]
-    dec_species <- args[9]
+    dec_env <- ifelse(args[8]=="Dot", ".", ",")
+    dec_species <- ifelse(args[9]=="Dot", ".", ",")
 }
 
 ### load data