Mercurial > repos > ecology > ecoregion_clara_cluster
comparison cluster.xml @ 2:24a81631a8b5 draft
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
| author | ecology |
|---|---|
| date | Thu, 21 Mar 2024 14:04:36 +0000 |
| parents | edb8d19735a6 |
| children | 844b5bf84164 |
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| 1:edb8d19735a6 | 2:24a81631a8b5 |
|---|---|
| 20 '$output3' | 20 '$output3' |
| 21 ]]></command> | 21 ]]></command> |
| 22 <inputs> | 22 <inputs> |
| 23 <param name="envfile" type="data" format="tabular" label="Environmental file (tabular only)"/> | 23 <param name="envfile" type="data" format="tabular" label="Environmental file (tabular only)"/> |
| 24 <param name="predictionmatrix" type="data" format="tabular" label="Prediction matrix (file 'data to cluster' from Cluster Estimate tool)"/> | 24 <param name="predictionmatrix" type="data" format="tabular" label="Prediction matrix (file 'data to cluster' from Cluster Estimate tool)"/> |
| 25 <param name="predictionfile" type="data" format="tabular" label="Prediction file (file 'data.bio table' from Cluster Estimate tool)"/> | 25 <param name="predictionfile" type="data" format="tabular" label="Prediction table (file 'data.bio table' from Cluster Estimate tool)"/> |
| 26 <param name="k" type="integer" label="Number of Cluster wanted" min= "1" value="2"/> | 26 <param name="k" type="integer" label="Number of Cluster wanted" min= "1" value="2"/> |
| 27 <param name="metric" type="select" label="What metric to use to calculate dissimilarities between observations ?"> | 27 <param name="metric" type="select" label="What metric to use to calculate dissimilarities between observations ?"> |
| 28 <option value = "manhattan">manhattan</option> | 28 <option value = "manhattan">manhattan</option> |
| 29 <option value = "euclidean">euclidean</option> | 29 <option value = "euclidean">euclidean</option> |
| 30 <option value = "jaccard">jaccard</option> | 30 <option value = "jaccard">jaccard</option> |
| 44 <param name='k' value="2"/> | 44 <param name='k' value="2"/> |
| 45 <param name='metric' value="manhattan"/> | 45 <param name='metric' value="manhattan"/> |
| 46 <param name='sample' value="10"/> | 46 <param name='sample' value="10"/> |
| 47 <output name='output1'> | 47 <output name='output1'> |
| 48 <assert_contents> | 48 <assert_contents> |
| 49 <has_size value="7369" delta="1000"/> | 49 <has_size value="8359" delta="500"/> |
| 50 </assert_contents> | 50 </assert_contents> |
| 51 </output> | 51 </output> |
| 52 <output name='output2'> | 52 <output name='output2'> |
| 53 <assert_contents> | 53 <assert_contents> |
| 54 <has_n_columns n="3"/> | 54 <has_n_columns n="3"/> |