Mercurial > repos > ecology > ecoregion_eco_map
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planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 459ba1277acd7d8d4a02f90dbd7ff444bf8eac92
author | ecology |
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date | Wed, 24 Jan 2024 15:53:20 +0000 |
parents | 3d750279158b |
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<tool id="ecoregion_eco_map" name="EcoMap" version="0.1.0+galaxy0" profile="22.05"> <description>Create map from cluster to visualize ecoregions</description> <requirements> <requirement type="package" version="4.2.3">r-base</requirement> <requirement type="package" version="3.3">r-tmap</requirement> <requirement type="package" version="1.0_12">r-sf</requirement> <requirement type="package" version="1.1.1">r-dplyr</requirement> </requirements> <command detect_errors="exit_code"><![CDATA[ Rscript '$__tool_directory__/crea_carte_G.R' '$cluster' '$output' ]]> </command> <inputs> <param name="cluster" type="data" format="tabular" label="Source file (File 'cluster points' from previous step)" help="See example below"/> </inputs> <outputs> <data name="output" from_work_dir="ecoregions.png" format="png" label="Map"/> </outputs> <tests> <test> <param name='cluster' value="points_clus.tsv"/> <output name='output' value="ecoregions.png"/> </test> </tests> <help><![CDATA[ ================== **What it does ?** ================== The clusters obtained in the previous step are projected on a map to obtain the spatial distribution of each ecoregion. =================== **How to use it ?** =================== This script takes as input a file containing for each environmental pixel its associated cluster. See example below. The output of this script is a map representing ecoregions. +--------+--------+---------+ | lat | long | cluster | +--------+--------+---------+ | -65.57 | 139.22 | 1 | +--------+--------+---------+ | -65.57 | 139.22 | 1 | +--------+--------+---------+ | ... | ... | ... | +--------+--------+---------+ ]]></help> </tool>