# HG changeset patch
# User ecology
# Date 1748427172 0
# Node ID 1d225ca5fac006d245e9da33b2b4aee5d648b75f
# Parent  4ed3e4f04b79ff6373e92b1490c829953f66973d
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit ced658540f05bb07e1e687af30a3fa4ea8e4803c

diff -r 4ed3e4f04b79 -r 1d225ca5fac0 GeoNearestNeighbor.xml
--- a/GeoNearestNeighbor.xml	Wed May 14 13:48:46 2025 +0000
+++ b/GeoNearestNeighbor.xml	Wed May 28 10:12:52 2025 +0000
@@ -1,4 +1,4 @@
-<tool id="ecoregion_GeoNearestNeighbor" name="GeoNearestNeighbor" version="0.1.0+galaxy0" profile="21.05">
+<tool id="ecoregion_GeoNearestNeighbor" name="GeoNearestNeighbor" version="0.1.2+galaxy0" profile="23.2">
     <description>Merge two data tables by finding the closest points based on latitude and longitude coordinates (WGS84 projection).</description>
     <requirements>
        <requirement type="package" version="4.3.2">r-base</requirement>
@@ -34,12 +34,16 @@
     </outputs>
     <tests>
         <test>
-            <param name="env" value="ceamarc_env.tsv"/>
-            <param name="envgeolat" value="2"/>
-            <param name="envgeolong" value="1"/>
-            <param name="occ" value="fish_wide.tsv"/>
-            <param name="occgeolat" value="1"/>
-            <param name="occgeolong" value="2"/>
+            <section name="env_file">
+                <param name="env" value="ceamarc_env.tsv"/>
+                <param name="envgeolat" value="2"/>
+                <param name="envgeolong" value="1"/>
+            </section>
+            <section name="occ_file">
+                <param name="occ" value="fish_wide.tsv"/>
+                <param name="occgeolat" value="1"/>
+                <param name="occgeolong" value="2"/>
+            </section>
             <output name='occ_env_out'>
                 <assert_contents>
             	    <has_size value="2234" delta="50"/>
diff -r 4ed3e4f04b79 -r 1d225ca5fac0 brt.R
--- a/brt.R	Wed May 14 13:48:46 2025 +0000
+++ b/brt.R	Wed May 28 10:12:52 2025 +0000
@@ -21,8 +21,8 @@
     enviro <- args[1]
     species_files <- args[2]
     abio_para <- args[3]
-    dec_env <- args[8]
-    dec_species <- args[9]
+    dec_env <- ifelse(args[8]=="Dot", ".", ",")
+    dec_species <- ifelse(args[9]=="Dot", ".", ",")
 }
 
 ### load data