Mercurial > repos > ecology > eml2eal
comparison eml2eal.xml @ 6:6fc2341a92cb draft
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 2d36dc964f548b5acbc43ffd78e51e6fc7dc80bb
| author | ecology |
|---|---|
| date | Tue, 10 Sep 2024 12:50:47 +0000 |
| parents | 5c0290c4225a |
| children |
comparison
equal
deleted
inserted
replaced
| 5:bd8b3e7541d5 | 6:6fc2341a92cb |
|---|---|
| 1 <tool id="eml2eal" name="EML to EAL" version="0.1.0+galaxy0" profile="22.05"> | 1 <tool id="eml2eal" name="EML to EAL" version="0.1.0+galaxy0" profile="22.05"> |
| 2 <description> Create EAL templates from EML metadata </description> | 2 <description> Create EAL templates from EML metadata </description> |
| 3 <requirements> | 3 <requirements> |
| 4 <requirement type="package" version="3.5.5">r-emlassemblyline</requirement> | 4 <container type="docker">outils-patrinat.mnhn.fr/metashark:latest</container> |
| 5 </requirements> | 5 </requirements> |
| 6 <command detect_errors="exit_code"><![CDATA[ | 6 <command detect_errors="exit_code"><![CDATA[ |
| 7 Rscript | 7 Rscript |
| 8 '$__tool_directory__/eml2eal.R' | 8 '$__tool_directory__/eml2eal.R' |
| 9 '$inputmetadatafile' && | 9 '$inputmetadatafile' && |
| 49 The results will be presented in a Galaxy Collection. You can then either download the files or you can edit them directly on Galaxy by selecting the *Visualize* icon | 49 The results will be presented in a Galaxy Collection. You can then either download the files or you can edit them directly on Galaxy by selecting the *Visualize* icon |
| 50 on the bottom of the templates outputs and and then selecting *Editor* in the list. | 50 on the bottom of the templates outputs and and then selecting *Editor* in the list. |
| 51 Once edited, this templates can me reassembled to produce a new EML with the **make_eml** tool in the EMLassemblyline tool section. | 51 Once edited, this templates can me reassembled to produce a new EML with the **make_eml** tool in the EMLassemblyline tool section. |
| 52 | 52 |
| 53 ]]></help> | 53 ]]></help> |
| 54 <citations> | |
| 55 <citation type="bibtex">@Manual{, | |
| 56 title = {EMLassemblyline: A tool kit for building EML metadata workflows}, | |
| 57 author = {Colin Smith}, | |
| 58 year = {2022}, | |
| 59 note = {https://github.com/EDIorg/EMLassemblyline, | |
| 60 https://ediorg.github.io/EMLassemblyline/}, | |
| 61 }</citation> | |
| 62 </citations> | |
| 54 </tool> | 63 </tool> |