Mercurial > repos > ecology > eml_validate
comparison eal_table_templates.R @ 0:ad96b20423cf draft default tip
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 4b040fe7867d965fb88ce70cc08081367b62b063
| author | ecology |
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| date | Fri, 27 Sep 2024 13:01:04 +0000 |
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| -1:000000000000 | 0:ad96b20423cf |
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| 1 #28/11/2023 #SEGUINEAU Pauline | |
| 2 | |
| 3 #Load packages | |
| 4 | |
| 5 library(EMLassemblyline) | |
| 6 | |
| 7 #Load arguments | |
| 8 | |
| 9 if (length(commandArgs(trailingOnly = TRUE)) > 0) { | |
| 10 data_table <- commandArgs(trailingOnly = TRUE)[1] | |
| 11 } | |
| 12 | |
| 13 #Transform arguments | |
| 14 | |
| 15 table = strsplit(data_table," ") | |
| 16 | |
| 17 #Make templates to describe data tables : Describes columns of a data table (classes, units, datetime formats, missing value codes) + catégorical variables. | |
| 18 | |
| 19 template_table_attributes(path = ".",data.path= "data_files", data.table = table[[1]]) | |
| 20 template_categorical_variables(path = ".", data.path = "data_files") | |
| 21 |