view eml_validate.xml @ 0:ad96b20423cf draft default tip

planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 4b040fe7867d965fb88ce70cc08081367b62b063

<tool id="eml_validate" name="Eml validate:" version="0.1.0" profile="21.05">
    <description>check if your EML file is valid</description>
    <requirements>
        <requirement type="package" version="4.3.3">r-base</requirement>
        <requirement type="package" version="2.0.6.1">r-eml</requirement>
        <requirement type="package" version="0.5.1">r-emld</requirement>
    </requirements>
    <command detect_errors="exit_code"><![CDATA[
     Rscript
         '$__tool_directory__/eml_validate.R' > report.txt
         '$inputmetadatafile'
         '$output'
    ]]></command>
    <inputs>
        <param name="inputmetadatafile" type="data" format="xml" label="EML metadata file" help="Insert only metadata using EML standard."/>
    </inputs>
    <outputs>
       <data name="output" from_work_dir="report.txt" format="txt" label="Informations report"/>
    </outputs>
    <tests>
        <test>
            <param name="inputmetadatafile" value="metadataoutput.xml"/>
            <output name='output' value="report.txt"/>
        </test>
    </tests>
    <help><![CDATA[
    
**What it does?**
--------------------
    
Eml_validate processes an EML document using the XSD schema for the appropriate version of EML and determines if the document is schema-valid as defined by the XSD specification.
    
**How to use it?**
--------------------

You need to input an EML file in xml format. And the tool will produce a text file with the information you need. 
There are two different cases: 
1) Your EML file is valid.
2) Your EML file is not valid, and a list of errors is displayed for you to improve your EML file.
    
    ]]></help>
    <citations>
       <citation type="doi">10.32614/CRAN.package.emld</citation>
       <citation type="doi">10.32614/CRAN.package.EML</citation>
    </citations>
</tool>