# HG changeset patch
# User ecology
# Date 1749142268 0
# Node ID 7a952542e639e18d88b4aaf82d1060c091b1c931
# Parent  b8f366e925e794cc31f40d766e03df82579639d2
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Phylodiversity_workflow commit cbd0cb48be9f2aa5e30c917d6a9031ef1a7a83c8

diff -r b8f366e925e7 -r 7a952542e639 EstimEndem.R
--- a/EstimEndem.R	Tue May 20 09:53:27 2025 +0000
+++ b/EstimEndem.R	Thu Jun 05 16:51:08 2025 +0000
@@ -43,7 +43,7 @@
   select_linkage(phylo_beta[[1]])
   
   #select optimal number of clusters with selected method
-  optim <- optimal_phyloregion(phylo_beta[[3]], k = 30)
+  optim <- optimal_phyloregion(phylo_beta[[3]])
   print(paste("the best number of cluster is :", optim$optimal$k))
   #plot(optim$df$k, optim$df$ev, pch = 20)  # k - nbr of clusters VS explained variance given k
   # k has to be selected by a user
diff -r b8f366e925e7 -r 7a952542e639 EstimEndem.xml
--- a/EstimEndem.xml	Tue May 20 09:53:27 2025 +0000
+++ b/EstimEndem.xml	Thu Jun 05 16:51:08 2025 +0000
@@ -1,4 +1,4 @@
-<tool id="estimate_endem" name="EstimEndem" version="0.1.0+galaxy0" profile="21.05">
+<tool id="estimate_endem" name="EstimEndem" version="0.1.1+galaxy0" profile="21.05">
     <description>
         of each cell of a spatial grid
     </description>