Mercurial > repos > ecology > geo_cov_template

annotate eml2eal.R @ 4:d53b708cb348 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 2d36dc964f548b5acbc43ffd78e51e6fc7dc80bb
author ecology
date Tue, 10 Sep 2024 12:51:06 +0000
parents dc2dfad1627b
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
dc2dfad1627b planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit ea09df299078ff13beda210b36b7edaa6a79c099
ecology
parents:
diff changeset
1 ##07/06/2023
dc2dfad1627b planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit ea09df299078ff13beda210b36b7edaa6a79c099
ecology
parents:
diff changeset
2 ##Genthon Tanguy
dc2dfad1627b planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit ea09df299078ff13beda210b36b7edaa6a79c099
ecology
parents:
diff changeset
3 ###eml2eal
dc2dfad1627b planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit ea09df299078ff13beda210b36b7edaa6a79c099
ecology
parents:
diff changeset
4
dc2dfad1627b planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit ea09df299078ff13beda210b36b7edaa6a79c099
ecology
parents:
diff changeset
5 #load arguments
dc2dfad1627b planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit ea09df299078ff13beda210b36b7edaa6a79c099
ecology
parents:
diff changeset
6 args = commandArgs(trailingOnly=TRUE)
dc2dfad1627b planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit ea09df299078ff13beda210b36b7edaa6a79c099
ecology
parents:
diff changeset
7 if (length(args)==0)
dc2dfad1627b planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit ea09df299078ff13beda210b36b7edaa6a79c099
ecology
parents:
diff changeset
8 {
dc2dfad1627b planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit ea09df299078ff13beda210b36b7edaa6a79c099
ecology
parents:
diff changeset
9 stop("This tool needs at least one argument")
dc2dfad1627b planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit ea09df299078ff13beda210b36b7edaa6a79c099
ecology
parents:
diff changeset
10 }else{
dc2dfad1627b planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit ea09df299078ff13beda210b36b7edaa6a79c099
ecology
parents:
diff changeset
11 data <- args[1]
dc2dfad1627b planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit ea09df299078ff13beda210b36b7edaa6a79c099
ecology
parents:
diff changeset
12 }
dc2dfad1627b planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit ea09df299078ff13beda210b36b7edaa6a79c099
ecology
parents:
diff changeset
13
dc2dfad1627b planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit ea09df299078ff13beda210b36b7edaa6a79c099
ecology
parents:
diff changeset
14
dc2dfad1627b planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit ea09df299078ff13beda210b36b7edaa6a79c099
ecology
parents:
diff changeset
15 EMLassemblyline::eml2eal(data,path=".")