comparison geo_cov_template.xml @ 2:0fe3b8bd9d8b draft

planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit f00c48e2a16ba6154e6c1aa50330586eefb13a32

1:4f5816b57c13

<tool id="geo_cov_template" name="Make geographic coverage template" version="0.1.0+galaxy0" profile="22.05">
    <description>for EML metadata creation</description>
    <requirements>
        <requirement type="package" version="4.3.1">r-base</requirement>
        <requirement type="package" version="3.5.5">r-emlassemblyline</requirement>
    </requirements>
    <command detect_errors="exit_code"><![CDATA[
    

         <param name="long_col" type="data_column"  label="What column of your table contains longitude coordinates in decimal degrees ?" data_ref="inputdata"/>
         <param name="site_col" type="data_column"  label="What column of your table contains site names ?" data_ref="inputdata"/>
         <param name="empty" type="boolean"  label="Write an empty template file ?" />
    </inputs>
    <outputs>
         <data name="output" from_work_dir="geographic_coverage.txt" format="txt" label="geographic coverage template"/>
    </outputs>
    <tests>
        <test>
            <param name="inputdata" value="test-geocov.tabular"/>
            <param name="lat_col" value="2"/>

    <help><![CDATA[
    
**What it does?**
--------------------

This tool produce template for EML metadata. It produce templates for geographic coverage. 
This tool can be used with the "Make templates for core features of a data package" tool before the "make eml" tool.

**How to use it?**
--------------------
To use this tool, you need to upload a table containing geographic coordinates (the decimal separator must be ".", example below), then select wich column of your table contains latitude, longitude and site names. You can also decide to make an empty geografical coverage templates.

2:0fe3b8bd9d8b

<tool id="geo_cov_template" name="Make geographic coverage template" version="0.1.0+galaxy0" profile="22.05">
    <description>for EML metadata creation</description>
     <requirements>
        <requirement type="package" version="4.3.1">r-base</requirement>
        <requirement type="package" version="3.5.5">r-emlassemblyline</requirement>
    </requirements>
    <command detect_errors="exit_code"><![CDATA[
    

         <param name="long_col" type="data_column"  label="What column of your table contains longitude coordinates in decimal degrees ?" data_ref="inputdata"/>
         <param name="site_col" type="data_column"  label="What column of your table contains site names ?" data_ref="inputdata"/>
         <param name="empty" type="boolean"  label="Write an empty template file ?" />
    </inputs>
    <outputs>
         <data name="output" from_work_dir="geographic_coverage.txt" format="txt" label="geographic_coverage.txt"/>
    </outputs>
    <tests>
        <test>
            <param name="inputdata" value="test-geocov.tabular"/>
            <param name="lat_col" value="2"/>

    <help><![CDATA[
    
**What it does?**
--------------------

This tool produce template for EML metadata. It produce template for geographic coverage. 
After that, these files can be edited to add information about your data and then be used in the make eml tool to produce EML metadata.

**How to use it?**
--------------------
To use this tool, you need to upload a table containing geographic coordinates (the decimal separator must be ".", example below), then select wich column of your table contains latitude, longitude and site names. You can also decide to make an empty geografical coverage templates.