Mercurial > repos > ecology > iabiodiv_smartbiodiv_med_environ
changeset 1:b79faea33a8a draft
planemo upload for repository https://github.com/jeremyfix/medenv commit 56fa523a7852e06962a05a05224ca193c25e20bc
| author | ecology |
|---|---|
| date | Sat, 24 Feb 2024 18:12:18 +0000 |
| parents | f82f266381be |
| children | ca00b2eabdf3 |
| files | med_environ.py med_environ.xml |
| diffstat | 2 files changed, 8 insertions(+), 9 deletions(-) [+] |
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--- a/med_environ.py Thu Feb 15 20:01:29 2024 +0000 +++ b/med_environ.py Sat Feb 24 18:12:18 2024 +0000 @@ -63,11 +63,10 @@ # Loads the input dataset df = pd.read_csv(args.datafile, sep="\t") - lat_key = df.columns[args.lat_key] - long_key = df.columns[args.long_key] - depth_key = df.columns[args.depth_key] - date_key = df.columns[args.date_key] - print(lat_key, long_key, depth_key, date_key) + lat_key = df.columns[args.lat_key - 1] + long_key = df.columns[args.long_key - 1] + depth_key = df.columns[args.depth_key - 1] + date_key = df.columns[args.date_key - 1] df = df.apply( environment_observation,
--- a/med_environ.xml Thu Feb 15 20:01:29 2024 +0000 +++ b/med_environ.xml Sat Feb 24 18:12:18 2024 +0000 @@ -75,11 +75,11 @@ <test expect_num_outputs="1"> <param name="input" value="reef_life_subset.tsv"/> <param name="env_variables" value="bathymetry"/> <!-- This test is requesting etopo only --> - <param name="lat_key" value="8"/> - <param name="long_key" value="9"/> + <param name="lat_key" value="9"/> + <param name="long_key" value="10"/> <param name="tol_spatial_coordinates" value="0.2"/> - <param name="depth_key" value="11"/> - <param name="date_key" value="10"/> + <param name="depth_key" value="12"/> + <param name="date_key" value="11"/> <param name="verbose" value="False"/> <output name="out_file" file="expected-output.tsv"> <assert_contents>