Mercurial > repos > ecology > makeeml
comparison eal_templates.R @ 3:642e31c435c9 draft
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 5c327a780dc58fb954e7b65db6fd413ee3909c84
| author | ecology |
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| date | Mon, 04 Dec 2023 21:49:43 +0000 |
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| 2:8a697f446051 | 3:642e31c435c9 |
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| 1 #22/11/2023 #SEGUINEAU Pauline | |
| 2 | |
| 3 ###First tool of EML Workflow | |
| 4 | |
| 5 #Load packages | |
| 6 | |
| 7 library(EMLassemblyline) | |
| 8 | |
| 9 #Load arguments | |
| 10 | |
| 11 args = commandArgs(trailingOnly=TRUE) | |
| 12 if(length(args)>0){ | |
| 13 | |
| 14 license <- args[1] | |
| 15 file_type <- args[2] | |
| 16 } | |
| 17 | |
| 18 #Make templates to describe core features of a data package (abstract, methods, keywords, personnel, license). | |
| 19 | |
| 20 template_core_metadata(path=".",license = license, file.type = file_type) | |
| 21 | |
| 22 | |
| 23 |