Mercurial > repos > ecology > obisindicators
diff obisindicators.r @ 1:d7b6ff32d072 draft
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/obisindicators commit d1d3e8640457c30349b842ea05de64b9312890f4
author | ecology |
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date | Wed, 25 Jan 2023 16:01:52 +0000 |
parents | 1015a0070bac |
children |
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--- a/obisindicators.r Thu Dec 29 13:05:04 2022 +0000 +++ b/obisindicators.r Wed Jan 25 16:01:52 2023 +0000 @@ -32,9 +32,10 @@ spe <- as.numeric(args[6]) rec <- as.numeric(args[7]) crs <- as.numeric(args[8]) - source(args[9]) + reso <- as.numeric(args[9]) source(args[10]) source(args[11]) + source(args[12]) } if (hr == "false") { @@ -63,7 +64,7 @@ #Create a discrete global grid #Create an ISEA discrete global grid of resolution 9 using the dggridR package: -dggs <- dggridR::dgconstruct(projection = "ISEA", topology = "HEXAGON", res = 9) +dggs <- dggridR::dgconstruct(projection = "ISEA", topology = "HEXAGON", res = reso) #Then assign cell numbers to the occurrence data occ$cell <- dggridR::dgGEO_to_SEQNUM(dggs, occ$decimalLongitude, occ$decimalLatitude)[["seqnum"]]