Mercurial > repos > ecology > pampa_glmsp

comparison PAMPA_GLM_SP.xml @ 3:c12897ba5f83 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/ColineRoyaux/PAMPA-Galaxy commit cd938a05cb066b16f2518159fa0ff5e3ed8a2b2b"
author ecology
date Mon, 26 Apr 2021 16:05:35 +0000
parents 6c14021f678e
children 7a69e1c8ba46
comparison
equal deleted inserted replaced
2:6c14021f678e 3:c12897ba5f83
117 117
118 - 'species.code' 118 - 'species.code'
119 119
120 - At least one population metric 120 - At least one population metric
121 121
122 +------------------+--------------+---------+---------+-----+ 122 +----------------------+--------------+---------+---------+-----+
123 | observation.unit | species.code | metric1 | metric2 | ... | 123 | observation.unit | species.code | metric1 | metric2 | ... |
124 +==================+==============+=========+=========+=====+ 124 +======================+==============+=========+=========+=====+
125 | site_yearID | species code | 2 | 0.4 | ... | 125 | year_locationID | species code | 2 | 0.4 | ... |
126 +------------------+--------------+---------+---------+-----+ 126 +----------------------+--------------+---------+---------+-----+
127 | ... | ... | ... | ... | ... | 127 | ... | ... | ... | ... | ... |
128 +------------------+--------------+---------+---------+-----+ 128 +----------------------+--------------+---------+---------+-----+
129 129
130 OR 130 OR
131 131
132 +------+----------+--------------+---------+---------+-----+ 132 +------+----------+--------------+---------+---------+-----+
133 | year | location | species.code | metric1 | metric2 | ... | 133 | year | location | species.code | metric1 | metric2 | ... |
137 | ... | ... | ... | ... | ... | ... | 137 | ... | ... | ... | ... | ... | ... |
138 +------+----------+--------------+---------+---------+-----+ 138 +------+----------+--------------+---------+---------+-----+
139 139
140 The first input may be extracted from the 'Calculate presence absence' tool. 140 The first input may be extracted from the 'Calculate presence absence' tool.
141 141
142 A tabular file with unitobs or location data which contains at least as much columns as used response variables and separation factor in addition with the 'observation.unit' or 'location' and 'species.code' column. 142 A tabular file with observation unit data which contains at least as much columns as used response variables in addition with the 'observation.unit' and 'species.code' column.
143 143
144 +--------------------------------+--------------+---------+--------+------------+-----+ 144 +-------------------+--------------+---------+--------+------------+-----+
145 | observation.unit OR location | species.code | site | year | habitat | ... | 145 | observation.unit | species.code | site | year | habitat | ... |
146 +================================+==============+=========+========+============+=====+ 146 +===================+==============+=========+========+============+=====+
147 | site_yearID OR locationID | species code | site ID | 2000 | habitatID | ... | 147 | year_locationID | species code | site ID | 2000 | habitatID | ... |
148 +--------------------------------+--------------+---------+--------+------------+-----+ 148 +-------------------+--------------+---------+--------+------------+-----+
149 | ... | ... | ... | ... | ... | ... | 149 | ... | ... | ... | ... | ... | ... |
150 +--------------------------------+--------------+---------+--------+------------+-----+ 150 +-------------------+--------------+---------+--------+------------+-----+
151 151
152 The site may represent the same entity as the location or represent an aggregation of several locations. 152 The site may represent the same entity as the location or represent an aggregation of several locations.
153 153
154 | 154 |
155 155
156 **Output** 156 **Output**
157 157
158 Two text files : 158 Three text files :
159 159
160 - A first text file with GLM results. One analysis per species. 160 - A first tabular file with GLM results. One analysis per species.
161 161
162 - A second text file with simple statistics on the whole dataset. 162 - A second text file with simple statistics on the whole dataset.
163
164 - A third text file with ratings of your analysis based on several criterias.
163 165
164 | 166 |
165 167
166 **Source** 168 **Source**
167 169