Mercurial > repos > ecology > pampa_glmsp
comparison PAMPA_GLM_SP.xml @ 3:c12897ba5f83 draft
"planemo upload for repository https://github.com/ColineRoyaux/PAMPA-Galaxy commit cd938a05cb066b16f2518159fa0ff5e3ed8a2b2b"
author | ecology |
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date | Mon, 26 Apr 2021 16:05:35 +0000 |
parents | 6c14021f678e |
children | 7a69e1c8ba46 |
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2:6c14021f678e | 3:c12897ba5f83 |
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117 | 117 |
118 - 'species.code' | 118 - 'species.code' |
119 | 119 |
120 - At least one population metric | 120 - At least one population metric |
121 | 121 |
122 +------------------+--------------+---------+---------+-----+ | 122 +----------------------+--------------+---------+---------+-----+ |
123 | observation.unit | species.code | metric1 | metric2 | ... | | 123 | observation.unit | species.code | metric1 | metric2 | ... | |
124 +==================+==============+=========+=========+=====+ | 124 +======================+==============+=========+=========+=====+ |
125 | site_yearID | species code | 2 | 0.4 | ... | | 125 | year_locationID | species code | 2 | 0.4 | ... | |
126 +------------------+--------------+---------+---------+-----+ | 126 +----------------------+--------------+---------+---------+-----+ |
127 | ... | ... | ... | ... | ... | | 127 | ... | ... | ... | ... | ... | |
128 +------------------+--------------+---------+---------+-----+ | 128 +----------------------+--------------+---------+---------+-----+ |
129 | 129 |
130 OR | 130 OR |
131 | 131 |
132 +------+----------+--------------+---------+---------+-----+ | 132 +------+----------+--------------+---------+---------+-----+ |
133 | year | location | species.code | metric1 | metric2 | ... | | 133 | year | location | species.code | metric1 | metric2 | ... | |
137 | ... | ... | ... | ... | ... | ... | | 137 | ... | ... | ... | ... | ... | ... | |
138 +------+----------+--------------+---------+---------+-----+ | 138 +------+----------+--------------+---------+---------+-----+ |
139 | 139 |
140 The first input may be extracted from the 'Calculate presence absence' tool. | 140 The first input may be extracted from the 'Calculate presence absence' tool. |
141 | 141 |
142 A tabular file with unitobs or location data which contains at least as much columns as used response variables and separation factor in addition with the 'observation.unit' or 'location' and 'species.code' column. | 142 A tabular file with observation unit data which contains at least as much columns as used response variables in addition with the 'observation.unit' and 'species.code' column. |
143 | 143 |
144 +--------------------------------+--------------+---------+--------+------------+-----+ | 144 +-------------------+--------------+---------+--------+------------+-----+ |
145 | observation.unit OR location | species.code | site | year | habitat | ... | | 145 | observation.unit | species.code | site | year | habitat | ... | |
146 +================================+==============+=========+========+============+=====+ | 146 +===================+==============+=========+========+============+=====+ |
147 | site_yearID OR locationID | species code | site ID | 2000 | habitatID | ... | | 147 | year_locationID | species code | site ID | 2000 | habitatID | ... | |
148 +--------------------------------+--------------+---------+--------+------------+-----+ | 148 +-------------------+--------------+---------+--------+------------+-----+ |
149 | ... | ... | ... | ... | ... | ... | | 149 | ... | ... | ... | ... | ... | ... | |
150 +--------------------------------+--------------+---------+--------+------------+-----+ | 150 +-------------------+--------------+---------+--------+------------+-----+ |
151 | 151 |
152 The site may represent the same entity as the location or represent an aggregation of several locations. | 152 The site may represent the same entity as the location or represent an aggregation of several locations. |
153 | 153 |
154 | | 154 | |
155 | 155 |
156 **Output** | 156 **Output** |
157 | 157 |
158 Two text files : | 158 Three text files : |
159 | 159 |
160 - A first text file with GLM results. One analysis per species. | 160 - A first tabular file with GLM results. One analysis per species. |
161 | 161 |
162 - A second text file with simple statistics on the whole dataset. | 162 - A second text file with simple statistics on the whole dataset. |
163 | |
164 - A third text file with ratings of your analysis based on several criterias. | |
163 | 165 |
164 | | 166 | |
165 | 167 |
166 **Source** | 168 **Source** |
167 | 169 |