Mercurial > repos > ecology > taxo_cov_template
annotate eml2eal.R @ 2:2af7401f13e0 draft
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit f00c48e2a16ba6154e6c1aa50330586eefb13a32
author | ecology |
---|---|
date | Sat, 23 Dec 2023 20:41:42 +0000 |
parents | 4cd3d9fdb5f3 |
children |
rev | line source |
---|---|
0
4cd3d9fdb5f3
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit ea09df299078ff13beda210b36b7edaa6a79c099
ecology
parents:
diff
changeset
|
1 ##07/06/2023 |
4cd3d9fdb5f3
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit ea09df299078ff13beda210b36b7edaa6a79c099
ecology
parents:
diff
changeset
|
2 ##Genthon Tanguy |
4cd3d9fdb5f3
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit ea09df299078ff13beda210b36b7edaa6a79c099
ecology
parents:
diff
changeset
|
3 ###eml2eal |
4cd3d9fdb5f3
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit ea09df299078ff13beda210b36b7edaa6a79c099
ecology
parents:
diff
changeset
|
4 |
4cd3d9fdb5f3
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit ea09df299078ff13beda210b36b7edaa6a79c099
ecology
parents:
diff
changeset
|
5 #load arguments |
4cd3d9fdb5f3
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit ea09df299078ff13beda210b36b7edaa6a79c099
ecology
parents:
diff
changeset
|
6 args = commandArgs(trailingOnly=TRUE) |
4cd3d9fdb5f3
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit ea09df299078ff13beda210b36b7edaa6a79c099
ecology
parents:
diff
changeset
|
7 if (length(args)==0) |
4cd3d9fdb5f3
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit ea09df299078ff13beda210b36b7edaa6a79c099
ecology
parents:
diff
changeset
|
8 { |
4cd3d9fdb5f3
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit ea09df299078ff13beda210b36b7edaa6a79c099
ecology
parents:
diff
changeset
|
9 stop("This tool needs at least one argument") |
4cd3d9fdb5f3
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit ea09df299078ff13beda210b36b7edaa6a79c099
ecology
parents:
diff
changeset
|
10 }else{ |
4cd3d9fdb5f3
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit ea09df299078ff13beda210b36b7edaa6a79c099
ecology
parents:
diff
changeset
|
11 data <- args[1] |
4cd3d9fdb5f3
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit ea09df299078ff13beda210b36b7edaa6a79c099
ecology
parents:
diff
changeset
|
12 } |
4cd3d9fdb5f3
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit ea09df299078ff13beda210b36b7edaa6a79c099
ecology
parents:
diff
changeset
|
13 |
4cd3d9fdb5f3
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit ea09df299078ff13beda210b36b7edaa6a79c099
ecology
parents:
diff
changeset
|
14 |
4cd3d9fdb5f3
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit ea09df299078ff13beda210b36b7edaa6a79c099
ecology
parents:
diff
changeset
|
15 EMLassemblyline::eml2eal(data,path=".") |