Mercurial > repos > ecology > taxo_cov_template
annotate entities_templates.R @ 3:a45fa46f8010 draft
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 43f3c45c97ba7d09ad1ea19df9e953cfe917dde8
author | ecology |
---|---|
date | Mon, 22 Jan 2024 14:56:39 +0000 |
parents | 2af7401f13e0 |
children |
rev | line source |
---|---|
2
2af7401f13e0
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit f00c48e2a16ba6154e6c1aa50330586eefb13a32
ecology
parents:
diff
changeset
|
1 #19/12/2023 #SEGUINEAU Pauline |
2af7401f13e0
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit f00c48e2a16ba6154e6c1aa50330586eefb13a32
ecology
parents:
diff
changeset
|
2 |
2af7401f13e0
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit f00c48e2a16ba6154e6c1aa50330586eefb13a32
ecology
parents:
diff
changeset
|
3 #Load arguments |
2af7401f13e0
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit f00c48e2a16ba6154e6c1aa50330586eefb13a32
ecology
parents:
diff
changeset
|
4 |
2af7401f13e0
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit f00c48e2a16ba6154e6c1aa50330586eefb13a32
ecology
parents:
diff
changeset
|
5 if (length(commandArgs(trailingOnly = TRUE)) > 0) { |
2af7401f13e0
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit f00c48e2a16ba6154e6c1aa50330586eefb13a32
ecology
parents:
diff
changeset
|
6 data_objects <- commandArgs(trailingOnly = TRUE)[1] |
2af7401f13e0
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit f00c48e2a16ba6154e6c1aa50330586eefb13a32
ecology
parents:
diff
changeset
|
7 } |
2af7401f13e0
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit f00c48e2a16ba6154e6c1aa50330586eefb13a32
ecology
parents:
diff
changeset
|
8 |
2af7401f13e0
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit f00c48e2a16ba6154e6c1aa50330586eefb13a32
ecology
parents:
diff
changeset
|
9 #Transform arguments |
2af7401f13e0
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit f00c48e2a16ba6154e6c1aa50330586eefb13a32
ecology
parents:
diff
changeset
|
10 |
2af7401f13e0
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit f00c48e2a16ba6154e6c1aa50330586eefb13a32
ecology
parents:
diff
changeset
|
11 data = strsplit(data_objects," ")[[1]] |
2af7401f13e0
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit f00c48e2a16ba6154e6c1aa50330586eefb13a32
ecology
parents:
diff
changeset
|
12 |
2af7401f13e0
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit f00c48e2a16ba6154e6c1aa50330586eefb13a32
ecology
parents:
diff
changeset
|
13 #Make entities templates for raster and/or vector and/or other entities data |
2af7401f13e0
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit f00c48e2a16ba6154e6c1aa50330586eefb13a32
ecology
parents:
diff
changeset
|
14 |
2af7401f13e0
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit f00c48e2a16ba6154e6c1aa50330586eefb13a32
ecology
parents:
diff
changeset
|
15 EMLassemblyline::template_entities(path="output_template",data.path="data_files",data.objects=data) |
2af7401f13e0
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit f00c48e2a16ba6154e6c1aa50330586eefb13a32
ecology
parents:
diff
changeset
|
16 |
2af7401f13e0
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit f00c48e2a16ba6154e6c1aa50330586eefb13a32
ecology
parents:
diff
changeset
|
17 |