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planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 090f8d595baafc1b4b9b1d60c4e962cc17f16fd1
author ecology
date Wed, 14 Feb 2024 13:12:53 +0000
parents 0cfc9b6da2ac
children
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#28/11/2023 #SEGUINEAU Pauline 

#Load packages

library(EMLassemblyline)

#Load arguments

if (length(commandArgs(trailingOnly = TRUE)) > 0) {
    data_table <- commandArgs(trailingOnly = TRUE)[1]
}

#Transform arguments

table =  strsplit(data_table," ")

#Make templates to describe data tables : Describes columns of a data table (classes, units, datetime formats, missing value codes) + catégorical variables.

template_table_attributes(path = ".",data.path= "data_files", data.table = table[[1]])
template_categorical_variables(path = ".", data.path = "data_files")