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comparison macros_tests_netcdf2netcdf.xml @ 0:810820a0d45c draft default tip

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planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/data_manipulation/xarray/ commit fd8ad4d97db7b1fd3876ff63e14280474e06fdf7
author ecology
date Sun, 31 Jul 2022 21:23:21 +0000
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-1:000000000000 0:810820a0d45c
1 <macros>
2 <xml name="section_tests">
3 <tests>
4 <test>
5 <param name="input" value="dataset-ibi-reanalysis-bio-005-003-monthly-regulargrid_1510914389133.nc"/>
6 <param name="var_tab" value="var_tab_dataset-ibi"/>
7 <section name="variable">
8 <param name="var" value="chl"/>
9 <param name="scale" value="1000.5"/>
10 </section>
11 <section name="subset_coords">
12 <conditional name="tsel">
13 <param name="by_click" value="isel_list"/>
14 <repeat name="user_choice">
15 <param name="dim" value="time"/>
16 <conditional name="condi_between">
17 <param name="comparator" value="sl"/>
18 <param name="t1" value="10"/>
19 <param name="t2" value="12"/>
20 </conditional>
21 </repeat>
22 <repeat name="user_choice">
23 <param name="dim" value="latitude"/>
24 <param name="dim_tab" value="latitude.tabular"/>
25 <conditional name="condi_between">
26 <param name="comparator" value="sl"/>
27 <param name="t1" value="5"/>
28 <param name="t2" value="10"/>
29 </conditional>
30 </repeat>
31 <repeat name="user_choice">
32 <param name="dim" value="longitude"/>
33 <param name="dim_tab" value="longitude.tabular"/>
34 <conditional name="condi_between">
35 <param name="comparator" value="sl"/>
36 <param name="t1" value="4"/>
37 <param name="t2" value="10"/>
38 </conditional>
39 </repeat>
40 </conditional>
41 </section>
42 <output name="output_netcdf" file="small.netcdf" compare="sim_size" delta="1000"/>
43 </test>
44 <test>
45 <param name="input" value="dataset-ibi-reanalysis-bio-005-003-monthly-regulargrid_1510914389133.nc"/>
46 <param name="var_tab" value="var_tab_dataset-ibi"/>
47 <section name="variable">
48 <param name="var" value="chl"/>
49 <param name="scale" value="1000.5"/>
50 <param name="write_all" value="true"/>
51 <param name="keep_attribute" value="false"/>
52 </section>
53 <section name="subset_coords">
54 <conditional name="tsel">
55 <param name="by_click" value="isel_list"/>
56 <repeat name="user_choice">
57 <param name="dim" value="time"/>
58 <conditional name="condi_between">
59 <param name="comparator" value="sl"/>
60 <param name="t1" value="10"/>
61 <param name="t2" value="12"/>
62 </conditional>
63 </repeat>
64 <repeat name="user_choice">
65 <param name="dim" value="latitude"/>
66 <param name="dim_tab" value="latitude.tabular"/>
67 <conditional name="condi_between">
68 <param name="comparator" value="sl"/>
69 <param name="t1" value="5"/>
70 <param name="t2" value="10"/>
71 </conditional>
72 </repeat>
73 <repeat name="user_choice">
74 <param name="dim" value="longitude"/>
75 <param name="dim_tab" value="longitude.tabular"/>
76 <conditional name="condi_between">
77 <param name="comparator" value="sl"/>
78 <param name="t1" value="4"/>
79 <param name="t2" value="10"/>
80 </conditional>
81 </repeat>
82 </conditional>
83 </section>
84 <output name="output_netcdf" file="all.netcdf" compare="sim_size" delta="1000"/>
85 </test>
86 <test>
87 <param name="input" value="dataset-ibi-reanalysis-bio-005-003-monthly-regulargrid_1510914389133.nc"/>
88 <param name="var_tab" value="var_tab_dataset-ibi"/>
89 <section name="subset_coords">
90 <conditional name="tsel">
91 <param name="by_click" value="isel_list"/>
92 <repeat name="user_choice">
93 <param name="dim" value="time"/>
94 <param name="dim_tab" value="time.tabular"/>
95 <conditional name="condi_between">
96 <param name="comparator" value="to"/>
97 <param name="value" value="12"/>
98 </conditional>
99 </repeat>
100 <repeat name="user_choice">
101 <param name="dim" value="latitude"/>
102 <param name="dim_tab" value="latitude.tabular"/>
103 <conditional name="condi_between">
104 <param name="comparator" value="is"/>
105 <param name="value" value="5"/>
106 </conditional>
107 </repeat>
108 <repeat name="user_choice">
109 <param name="dim" value="longitude"/>
110 <param name="dim_tab" value="longitude.tabular"/>
111 <conditional name="condi_between">
112 <param name="comparator" value="is"/>
113 <param name="value" value="4"/>
114 </conditional>
115 </repeat>
116 </conditional>
117 </section>
118 <output name="output_netcdf" file="small_all_variables.netcdf" compare="sim_size" delta="500"/>
119 </test>
120 <test>
121 <param name="input" value="dataset-ibi-reanalysis-bio-005-003-monthly-regulargrid_1510914389133.nc"/>
122 <param name="var_tab" value="var_tab_dataset-ibi"/>
123 <section name="subset_coords">
124 <conditional name="tsel">
125 <param name="by_click" value="isel"/>
126 <repeat name="user_choice">
127 <param name="dim" value="time"/>
128 <param name="dim_tab" value="time.tabular"/>
129 <conditional name="condi_between">
130 <param name="comparator" value="to"/>
131 <param name="value" value="12"/>
132 </conditional>
133 </repeat>
134 <repeat name="user_choice">
135 <param name="dim" value="latitude"/>
136 <param name="dim_tab" value="latitude.tabular"/>
137 <conditional name="condi_between">
138 <param name="comparator" value="is"/>
139 <param name="value" value="5"/>
140 </conditional>
141 </repeat>
142 <repeat name="user_choice">
143 <param name="dim" value="longitude"/>
144 <param name="dim_tab" value="longitude.tabular"/>
145 <conditional name="condi_between">
146 <param name="comparator" value="is"/>
147 <param name="value" value="4"/>
148 </conditional>
149 </repeat>
150 </conditional>
151 </section>
152 <output name="output_netcdf" file="small_all_variables.netcdf" compare="sim_size" delta="500"/>
153 </test>
154 <test>
155 <param name="input" value="dataset-ibi-reanalysis-bio-005-003-monthly-regulargrid_1510914389133.nc"/>
156 <param name="var_tab" value="var_tab_dataset-ibi"/>
157 <section name="variable">
158 <param name="var" value="chl,nh4"/>
159 </section>
160 <output name="output_netcdf" file="chl_nh4.netcdf" compare="sim_size" delta="500"/>
161 </test>
162 <test>
163 <param name="input" value="data_to_20040615.nc,data_from_20040615.nc"/>
164 <param name="var_tab" value="var_tab_dataset-ibi"/>
165 <section name="variable">
166 <param name="var" value="nh4"/>
167 </section>
168 <output name="output_netcdf" file="chl_alltimes.nc" compare="sim_size" delta="500"/>
169 </test>
170 <test>
171 <param name="input" value="dataset-ibi-reanalysis-bio-005-003-monthly-regulargrid_1510914389133.nc"/>
172 <param name="var_tab" value="var_tab_dataset-ibi"/>
173 <section name="subset_coords">
174 <conditional name="tsel">
175 <param name="by_click" value="sel"/>
176 <repeat name="user_choice">
177 <param name="dim" value="latitude"/>
178 <param name="dim_tab" value="latitude.tabular"/>
179 <conditional name="condi_between">
180 <param name="comparator" value="sl"/>
181 <param name="t1" value="44.5"/>
182 <param name="t2" value="45.0"/>
183 </conditional>
184 </repeat>
185 <repeat name="user_choice">
186 <param name="dim" value="longitude"/>
187 <param name="dim_tab" value="longitude.tabular"/>
188 <conditional name="condi_between">
189 <param name="comparator" value="is"/>
190 <param name="value" value="-3.5"/>
191 <param name="method" value="nearest"/>
192 </conditional>
193 </repeat>
194 </conditional>
195 </section>
196 <output name="output_netcdf" file="select_by_values.netcdf" compare="sim_size" delta="500"/>
197 </test>
198 <test>
199 <param name="input" value="dataset-ibi-reanalysis-bio-005-003-monthly-regulargrid_1510914389133.nc"/>
200 <param name="var_tab" value="var_tab_dataset-ibi"/>
201 <section name="variable">
202 <param name="var" value="chl,phy"/>
203 </section>
204 <section name="mask_values">
205 <conditional name="mask_condi">
206 <param name="mask_option" value="other"/>
207 <param name="set_other" value="1000"/>
208 </conditional>
209 <param name="where_condition" ftype="txt" value="where_condition.txt"/>
210 </section>
211 <output name="output_netcdf" file="chl_phy_where.netcdf" compare="sim_size" delta="500"/>
212 </test>
213 <test>
214 <param name="input" value="dataset-ibi-reanalysis-bio-005-003-monthly-regulargrid_1510914389133.nc"/>
215 <param name="var_tab" value="var_tab_dataset-ibi"/>
216 <section name="variable">
217 <param name="var" value="chl"/>
218 <param name="scale" value="1000.5"/>
219 <param name="write_all" value="true"/>
220 <param name="keep_attribute" value="true"/>
221 </section>
222 <section name="subset_coords">
223 <conditional name="tsel">
224 <param name="by_click" value="isel_list"/>
225 <repeat name="user_choice">
226 <param name="dim" value="time"/>
227 <conditional name="condi_between">
228 <param name="comparator" value="sl"/>
229 <param name="t1" value="10"/>
230 <param name="t2" value="12"/>
231 </conditional>
232 </repeat>
233 <repeat name="user_choice">
234 <param name="dim" value="latitude"/>
235 <param name="dim_tab" value="latitude.tabular"/>
236 <conditional name="condi_between">
237 <param name="comparator" value="sl"/>
238 <param name="t1" value="0"/>
239 <param name="t2" value="10"/>
240 </conditional>
241 </repeat>
242 <repeat name="user_choice">
243 <param name="dim" value="longitude"/>
244 <param name="dim_tab" value="longitude.tabular"/>
245 <conditional name="condi_between">
246 <param name="comparator" value="sl"/>
247 <param name="t1" value="1"/>
248 <param name="t2" value="20"/>
249 </conditional>
250 </repeat>
251 </conditional>
252 </section>
253 <section name="mask_values">
254 <conditional name="mask_condi">
255 <param name="mask_option" value="drop"/>
256 </conditional>
257 <param name="where_condition" ftype="txt" value="where_condition_simple.txt"/>
258 </section>
259 <output name="output_netcdf" file="chl_where_drop.netcdf" compare="sim_size" delta="500"/>
260 </test>
261 </tests>
262 </xml>
263 </macros>