view anonymization.xml @ 0:726a387cfdc2 draft default tip

"planemo upload for repository https://github.com/Marie59/Data_explo_tools commit 60627aba07951226c8fd6bb3115be4bd118edd4e"

<tool id="tool_anonymization" name="Spatial coordinates anonymization" version="@VERSION@" profile="20.01">
    <description> 
        without loss of the spatial relationships
    </description>
    <macros>
        <import>macro.xml</import>
    </macros>
    <requirements> 
        <requirement  type="package" version="0.8.1">r-tangles</requirement>
    </requirements>
    <command detect_errors="exit_code"><![CDATA[
        Rscript
            '$__tool_directory__/funct_anomy.r'
            '$input'
            '$colnames'
            '$latitude'
            '$longitude'
            '$output'
        ]]>
        </command>
        <inputs>
            <expand macro="explo_input"/>
            <param name="latitude" label="Select column containing latitudes in decimal degrees" type="data_column" numerical="true" data_ref="input" multiple="false" use_header_names="true"/>
            <param name="longitude" label="Select column containing longitudes in decimal degrees" type="data_column" numerical="true" data_ref="input" multiple="false" use_header_names="true"/>
        </inputs>
        <outputs>
            <data name="output" from_work_dir="anonym_data.tabular" format="tabular"/>
        </outputs>
        <tests>
            <test>
                <param name="input" value="Reel_life_survey_fish_modif.tabular"/>
                <param name="colnames" value="true"/>
                <param name="latitude" value="9"/>
                <param name="longitude" value="10"/>
                <output name="output">
                    <assert_contents>
                        <has_n_lines n="290"/>
                    </assert_contents>
                </output>
            </test>
        </tests>
        <help><![CDATA[
=====================================================
Anonymization of the spatial coordinates of your data
=====================================================


**What it does**

This tool anonymizes (random with 3 levels of abstraction) longitude and latitude decimal degrees coordinates of a tabular file without loss of the spatial relationships within the data. Handy to allow the sharing of sensitive data regarding threatened species or human activities for instance. 

Input description :

A tabular file with observation data. Must at least contain two columns, latitudes and longitudes.

+-------------+------------+
|   latitude  |  longitude |
+=============+============+
|      2      |      4     | 
+-------------+------------+
|     ...     |     ...    |
+-------------+------------+

Output description :

A tabular file with your original data file with its longitude and latitude replaced by anonymized longitudes and latitudes.

    ]]></help>   
    <citations>
    </citations>               
</tool>