Mercurial > repos > ecology > vigiechiro_idcorrect_2ndlayer
comparison IdTidyen.xml @ 1:f3fc8d243b1a draft default tip
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/vigiechiro commit 7ef0e58cbcbf41088e359f00b6c86504c773c271
author | ecology |
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date | Fri, 26 Apr 2019 12:20:52 -0400 |
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0:6681b6ba1d7e | 1:f3fc8d243b1a |
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1 <tool id="vigiechiro_idcorrect_2ndlayer" name="Tadarida data cleaner" version="@VERSION@"> | |
2 <description>clean data from animal detection on acoustic recordings</description> | |
3 <macros> | |
4 <import>vigiechiro_macros.xml</import> | |
5 </macros> | |
6 <expand macro="vigiechiro_requirements"/> | |
7 <command detect_errors="exit_code"><![CDATA[ | |
8 Rscript | |
9 '$__tool_directory__/Id_Tidy.R' | |
10 '$participation_file' | |
11 '${participation_file.name}' | |
12 '$output' | |
13 ]]> | |
14 </command> | |
15 <inputs> | |
16 <param name="participation_file" type="data" format="csv" label="Participation file" help="Summary table of TadaridaC"/> | |
17 </inputs> | |
18 <outputs> | |
19 <data name="output" from_work_dir="Id_tidy.tabular" format="tabular"/> | |
20 </outputs> | |
21 <tests> | |
22 <test> | |
23 <param name="participation_file" value="input_tidy_test1_obs.csv"/> | |
24 <output name="output" file="output_tidy.tabular"/> | |
25 </test> | |
26 </tests> | |
27 <help><![CDATA[ | |
28 | |
29 .. class:: infomark | |
30 | |
31 ========================== | |
32 Tadarida data cleaner | |
33 ========================== | |
34 | |
35 **What it does** | |
36 | |
37 This tool intends to clean and format data from Tadarida software, and improve data output according to context (= the whole output of a sampling session). This step is mandatory before applying validations with the "Identifications validation" tool. | |
38 | |
39 **Arguments** | |
40 | |
41 - Input is a summary table of TadaridaC output from vigiechiro.herokuapp.com web portal. | |
42 | |
43 - Output is a formated data table ready to be corrected with the validation tool. | |
44 | |
45 ]]></help> | |
46 <expand macro="vigiechiro_bibref" /> | |
47 </tool> |