Mercurial > repos > ecology > vigiechiro_idcorrect_2ndlayer
diff IdTidyen.xml @ 1:f3fc8d243b1a draft default tip
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/vigiechiro commit 7ef0e58cbcbf41088e359f00b6c86504c773c271
author | ecology |
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date | Fri, 26 Apr 2019 12:20:52 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/IdTidyen.xml Fri Apr 26 12:20:52 2019 -0400 @@ -0,0 +1,47 @@ +<tool id="vigiechiro_idcorrect_2ndlayer" name="Tadarida data cleaner" version="@VERSION@"> + <description>clean data from animal detection on acoustic recordings</description> + <macros> + <import>vigiechiro_macros.xml</import> + </macros> + <expand macro="vigiechiro_requirements"/> + <command detect_errors="exit_code"><![CDATA[ + Rscript + '$__tool_directory__/Id_Tidy.R' + '$participation_file' + '${participation_file.name}' + '$output' +]]> + </command> + <inputs> + <param name="participation_file" type="data" format="csv" label="Participation file" help="Summary table of TadaridaC"/> + </inputs> + <outputs> + <data name="output" from_work_dir="Id_tidy.tabular" format="tabular"/> + </outputs> + <tests> + <test> + <param name="participation_file" value="input_tidy_test1_obs.csv"/> + <output name="output" file="output_tidy.tabular"/> + </test> + </tests> + <help><![CDATA[ + +.. class:: infomark + +========================== +Tadarida data cleaner +========================== + +**What it does** + +This tool intends to clean and format data from Tadarida software, and improve data output according to context (= the whole output of a sampling session). This step is mandatory before applying validations with the "Identifications validation" tool. + +**Arguments** + +- Input is a summary table of TadaridaC output from vigiechiro.herokuapp.com web portal. + +- Output is a formated data table ready to be corrected with the validation tool. + + ]]></help> + <expand macro="vigiechiro_bibref" /> +</tool>